Heatmap: Cluster_860 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra006865 (PFN3)
-2.42 - -9.12 -9.62 -1.65 -0.4 -0.17 -1.31 -0.09 -0.85 -1.94 -0.74 0.07 0.62 1.34 1.22 1.24 0.5 0.61 0.18 -0.4 -0.56 -0.15 0.57 0.42 0.3 0.55 -0.1 -0.18 -0.32 0.79
Bra010358 (NPGR2)
-1.09 -0.69 -1.26 -1.0 -0.62 -0.25 -0.37 -0.41 0.02 -0.0 -0.1 -0.34 -0.48 0.29 0.87 0.36 0.46 1.04 0.54 -0.2 -0.24 -0.26 -0.36 0.51 0.33 0.02 0.22 -0.14 0.36 -0.13 0.02
Bra017374 (NET1C)
-2.53 -1.78 -1.04 -1.04 0.88 0.81 -0.44 -0.6 0.08 -0.55 0.34 0.51 -0.3 0.79 1.94 -0.26 0.44 0.86 0.3 -1.43 -1.32 -1.06 -0.88 -0.36 -0.31 -0.2 0.04 -0.93 -0.07 -0.57 0.13
Bra021842 (RLP27)
-2.25 -0.92 -2.16 -1.05 -2.03 -0.09 -1.68 0.08 -0.63 -1.28 -0.92 0.61 -1.03 -0.24 -0.22 0.37 0.77 -1.87 0.87 -0.82 0.12 -0.61 0.7 0.64 0.77 0.5 0.8 0.34 0.97 0.75 0.42
Bra028933 (PSL4)
-0.8 -0.86 -1.08 -0.71 -0.53 -0.1 0.11 -1.12 0.04 -0.63 -0.25 0.22 0.06 0.54 0.38 0.19 0.63 0.07 -0.12 -0.36 -0.32 0.43 0.27 0.15 0.51 -0.02 0.25 0.28 0.06 0.34 0.16
Bra032669 (EBS4)
-0.47 -0.76 -0.34 -0.6 0.2 0.5 -0.56 -0.22 0.3 0.12 0.1 0.01 0.1 0.24 0.82 -0.05 -0.16 0.72 -0.18 -0.13 -0.34 -0.43 -0.62 0.03 0.08 -0.16 0.1 0.1 0.07 -0.09 0.17

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.