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Heatmap: Cluster_136 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000493 (BGAL8)
 6.16 7.73 8.95 7.94 7.93 6.34 6.81 8.62 9.65 8.07 8.57 9.36 8.89 8.86 8.15 8.47 7.23 11.13 8.49 7.62 6.09 5.24 3.86 8.91 8.85 9.48 9.94 11.31 9.47 12.39 9.91
8.59 5.92 5.73 4.71 8.03 3.66 3.7 4.16 7.86 6.15 7.02 8.18 2.19 2.25 2.55 3.04 3.22 2.0 3.65 3.61 3.54 4.12 5.09 3.7 4.49 4.28 4.43 6.52 7.58 10.76 7.35
Bra000821 (ATHM2)
 637.86 542.24 475.28 506.25 894.42 630.22 507.76 442.94 720.49 687.29 687.37 691.93 458.0 480.28 521.92 510.56 520.45 413.38 714.89 593.45 595.94 607.54 203.88 529.46 532.11 501.54 561.63 720.04 648.57 815.35 678.55
Bra001975 (PCH1)
 6.32 3.31 3.77 2.45 8.83 5.22 5.16 6.36 8.11 4.05 5.27 7.06 3.13 8.25 8.0 4.67 3.46 6.79 6.32 5.99 3.9 6.71 4.62 4.57 3.4 3.83 3.52 10.64 6.9 9.81 4.81
Bra002957 (TZ)
 762.55 634.19 652.21 572.73 992.15 584.64 658.58 1041.46 737.91 662.05 608.52 838.94 268.45 377.48 409.76 276.97 264.79 359.56 569.01 433.65 434.85 463.25 210.03 453.97 428.28 402.61 536.23 1126.33 838.21 1222.53 662.97
Bra003434 (CLB1)
 61.59 66.8 71.04 66.84 61.13 65.67 53.63 53.78 55.17 52.08 49.47 47.03 36.52 58.37 66.56 55.22 46.65 46.63 49.36 57.57 54.29 54.13 30.32 60.42 61.08 64.69 59.52 75.9 73.35 56.37 44.72
Bra004064 (NPY8)
 32.18 27.57 25.8 26.91 32.19 32.99 21.84 27.9 31.3 23.36 26.77 26.27 21.34 23.32 20.54 18.09 19.07 22.12 23.94 18.82 19.83 19.1 7.31 21.67 21.62 30.77 22.5 36.96 37.29 32.02 23.53
26.79 17.03 21.29 7.84 43.38 13.88 17.69 26.69 32.23 19.15 25.73 23.82 25.82 11.26 7.36 9.55 4.71 13.34 13.35 9.05 14.7 10.85 8.95 32.18 28.1 22.82 35.39 49.09 49.0 49.6 36.85
Bra004781 (OASB)
 92.63 80.68 76.56 70.02 99.75 90.66 90.58 78.83 104.27 107.02 99.46 98.88 91.79 91.97 96.45 97.57 83.01 86.25 100.74 94.95 92.83 93.73 58.23 84.77 85.19 82.86 85.28 95.1 97.06 103.11 99.83
Bra005414 (CCP1)
 41.42 31.68 28.83 28.65 51.62 26.42 26.67 38.16 44.47 33.75 31.4 36.91 22.57 21.63 20.36 18.22 14.85 29.53 25.3 22.56 19.4 21.44 15.1 30.62 31.93 31.19 32.19 60.4 55.92 56.99 47.17
Bra005612 (GLXI-like;9)
 183.34 186.35 191.99 174.24 249.2 172.67 98.91 90.57 168.23 120.92 141.29 157.09 101.0 148.87 149.77 75.69 87.38 184.6 179.64 105.85 109.59 124.71 61.56 110.14 111.61 119.78 113.87 122.62 159.01 153.16 145.25
Bra005979 (scpl35)
 45.68 59.78 39.48 45.64 172.54 96.72 57.52 47.79 129.08 133.85 94.19 110.56 29.08 72.12 84.36 61.7 105.36 59.46 118.94 88.73 54.16 92.75 27.68 58.04 55.74 47.01 65.32 68.44 66.02 105.7 50.9
Bra006679 (NOT4A)
 17.57 14.88 13.71 15.45 15.15 16.22 13.67 12.49 12.17 12.32 13.83 12.34 7.48 13.18 13.43 7.6 14.73 6.56 9.22 11.35 8.44 11.68 9.28 11.82 12.31 9.53 10.74 15.0 14.98 14.18 9.38
Bra007430 (PIF5)
 151.87 135.79 128.41 135.09 113.21 138.95 111.33 106.84 141.28 90.61 121.67 117.44 72.78 137.55 134.03 79.85 76.79 72.06 110.26 94.64 96.95 93.9 31.03 126.33 126.09 160.46 118.36 135.99 161.13 142.26 111.64
Bra007678 (CP12)
 1110.56 830.67 653.41 529.9 1630.18 831.58 697.79 640.15 1033.67 830.83 915.8 1068.98 220.99 497.3 681.69 313.86 302.28 894.08 1198.76 604.37 584.95 740.03 74.91 480.44 443.74 366.49 533.7 733.95 890.39 1047.71 965.3
Bra008214 (GH9B7)
 14.27 22.99 21.85 21.03 19.34 13.76 21.95 27.07 25.8 28.38 26.47 24.53 20.48 22.64 20.75 26.47 22.56 36.67 22.34 21.47 21.59 19.44 13.26 25.59 26.75 28.81 28.26 26.65 23.75 21.21 20.02
Bra008371 (LZF1)
 2.55 2.14 1.91 1.76 5.73 3.29 6.9 12.56 5.54 3.36 3.67 6.4 4.82 1.57 1.93 2.13 2.03 7.21 4.3 2.46 2.44 3.34 5.13 3.75 3.83 3.93 4.9 11.75 8.34 9.86 6.67
Bra009302 (LNK4)
 154.7 128.53 100.72 138.42 62.89 97.42 102.66 111.01 87.07 61.04 90.84 81.12 73.82 126.53 85.36 43.59 61.72 71.19 57.35 64.09 60.91 60.3 33.25 91.78 98.57 159.31 88.09 105.59 123.31 66.92 73.35
Bra010123 (DXR)
 76.2 66.67 62.94 61.03 81.78 68.48 65.6 61.04 70.33 61.93 66.92 65.93 46.92 54.44 56.77 50.4 50.06 38.26 58.39 54.96 52.67 57.9 24.96 62.58 63.57 58.28 64.49 75.39 83.44 78.24 76.09
6.02 5.0 4.75 3.88 10.37 4.61 2.15 3.75 10.3 5.37 4.46 9.51 1.98 1.65 1.2 1.51 1.09 1.38 3.53 3.56 2.88 4.14 0.13 1.91 2.28 0.63 4.05 4.54 4.33 8.37 5.71
Bra010722 (DKML)
 3.85 3.27 3.32 4.55 4.9 2.9 5.87 10.24 5.75 5.05 6.02 6.88 5.84 4.1 3.59 4.31 4.05 3.6 3.36 3.26 3.61 2.98 3.16 4.54 4.58 7.01 4.5 5.87 7.35 10.17 8.88
Bra011014 (TTM2)
 0.74 0.45 0.35 0.42 0.77 0.51 0.63 1.06 0.66 0.61 0.41 0.47 0.86 0.38 0.34 0.37 0.34 0.57 0.46 0.4 0.32 0.48 0.71 0.68 0.52 0.45 0.45 0.91 0.58 0.76 0.81
106.82 92.29 117.8 90.04 138.5 39.37 142.33 201.26 215.44 155.38 237.54 221.82 121.45 57.29 61.53 104.42 82.77 193.85 107.66 108.2 98.32 121.47 51.7 113.36 110.05 125.77 119.23 138.89 116.07 174.75 185.39
Bra013300 (HHOA)
 49.76 36.71 35.12 38.92 45.21 48.87 31.06 29.24 36.7 38.05 36.01 36.61 26.04 32.05 30.96 30.85 30.72 19.42 30.04 35.01 34.42 36.24 14.43 38.18 39.46 35.12 37.72 50.03 50.06 38.5 46.73
0.65 0.19 0.41 0.45 0.47 0.27 0.34 0.29 0.77 0.93 0.5 0.37 0.69 0.72 0.51 0.63 0.46 0.42 0.98 0.15 0.39 0.3 0.41 1.17 1.07 0.89 0.9 0.88 0.68 1.02 0.88
14.84 4.42 9.83 0.42 20.82 5.48 13.7 25.13 18.81 13.79 12.31 11.24 17.38 5.01 1.7 9.38 13.98 13.76 6.34 14.13 9.75 12.97 10.95 17.22 18.08 2.62 23.96 30.96 23.67 14.47 27.36
Bra014765 (HEXO1)
 8.55 7.79 7.53 8.65 9.21 7.41 6.8 9.12 9.63 10.11 10.1 11.2 9.79 9.1 7.72 8.55 8.9 13.55 9.51 8.57 9.16 8.98 6.45 8.51 8.02 8.2 8.99 9.93 8.36 11.53 11.19
Bra015135 (ADG1)
 138.04 125.76 121.67 135.89 196.82 108.57 134.66 177.38 161.18 149.29 144.37 182.07 133.43 133.72 141.22 135.12 138.8 163.4 158.38 134.61 131.64 122.31 42.14 108.02 105.76 105.41 112.67 213.04 139.34 235.94 170.56
Bra016791 (ELP)
 576.52 370.7 395.91 446.97 1011.61 202.14 519.45 1394.61 905.86 848.25 714.08 1148.0 890.68 183.86 206.03 310.76 454.11 974.68 504.17 407.02 387.95 364.0 219.35 689.12 697.48 888.59 889.16 1313.04 1004.65 1428.41 1104.22
Bra018372 (PY)
 343.56 254.33 208.98 245.8 482.06 419.92 209.39 195.32 367.78 327.77 308.75 292.68 146.13 310.25 331.3 263.88 237.13 248.27 456.99 274.91 275.35 297.14 92.06 200.01 194.6 167.74 206.61 289.48 257.09 307.22 258.72
Bra018893 (FBN10)
 124.5 91.69 76.38 88.65 135.78 128.87 102.99 98.95 116.36 102.46 98.24 118.43 62.27 78.31 74.62 64.43 80.13 41.74 89.95 81.67 82.21 88.32 24.12 98.71 94.63 84.3 95.56 135.22 147.93 142.65 137.65
Bra018941 (MBP2)
 11.92 7.13 14.17 10.48 57.61 2.51 13.66 36.97 18.79 9.22 12.11 9.36 5.62 0.98 1.03 1.25 1.05 54.11 3.9 2.72 4.55 6.28 10.6 6.8 5.07 4.97 6.97 60.54 33.31 54.46 49.99
Bra019386 (TIPSY1)
 17.36 18.61 18.77 14.77 19.29 15.85 16.52 13.41 25.0 22.32 18.86 22.49 21.29 29.21 22.49 21.22 19.91 16.45 20.31 15.28 16.78 15.98 14.53 22.97 24.57 22.81 22.82 25.55 22.97 29.1 23.92
Bra019387 (SHOU4L2)
 6.65 8.09 4.49 7.47 6.04 3.3 3.3 6.2 6.01 5.07 4.07 5.98 5.37 9.2 8.2 4.91 3.51 7.83 5.72 3.29 3.34 2.66 3.59 6.14 6.16 9.2 5.93 8.96 6.04 8.01 5.35
Bra019474 (RPT1)
 75.9 73.28 65.25 69.69 81.36 54.02 33.46 51.99 75.64 65.75 60.59 68.54 38.85 55.57 49.67 40.66 37.57 21.38 49.52 45.38 44.11 43.97 12.61 42.03 44.65 55.23 47.52 78.38 78.94 74.68 60.21
Bra020046 (DY1)
 45.51 28.25 22.84 22.58 54.91 44.96 30.61 31.8 48.62 29.5 35.94 43.77 19.92 25.4 34.88 21.51 24.16 19.76 37.39 31.76 24.3 28.97 15.59 36.07 32.72 27.22 38.34 47.47 54.63 52.01 60.57
Bra021430 (PMI1)
 13.15 13.93 14.84 10.17 18.65 10.24 8.76 11.84 10.54 11.32 9.71 9.81 7.44 15.39 12.93 8.87 9.38 13.4 9.09 8.91 8.12 8.24 3.25 8.87 8.17 8.45 7.63 13.13 11.3 11.65 8.91
27.36 20.61 40.64 26.11 18.56 4.94 17.44 33.81 31.33 27.74 25.46 39.78 23.16 7.43 5.78 10.67 9.52 21.14 20.06 18.03 19.97 20.2 16.84 22.51 22.2 18.92 27.49 33.97 26.53 44.7 27.02
25.69 26.18 20.7 21.74 45.99 30.0 27.37 21.51 34.5 47.46 34.08 34.84 16.41 30.88 38.27 36.12 31.25 14.69 38.98 32.42 28.22 35.66 12.83 26.21 25.61 22.81 27.53 29.49 25.43 44.98 24.36
Bra022742 (TZ)
 1629.86 1429.24 1039.5 1319.58 1752.01 1921.22 1713.1 1716.54 1641.84 1176.99 1306.69 1483.3 775.06 1310.94 1773.8 784.9 1017.9 1395.06 1996.68 1265.53 1122.9 1228.88 275.97 1192.29 1088.08 991.57 1334.39 2128.99 1750.55 2057.52 1604.84
Bra024665 (HB54)
 0.76 0.86 1.02 0.65 0.86 0.71 0.92 1.16 1.34 1.14 1.73 1.59 1.13 0.27 0.4 0.82 0.24 1.12 0.71 1.0 0.93 0.51 0.33 1.11 0.99 0.61 1.08 0.61 0.73 1.57 1.83
Bra025180 (FBN3a)
 190.88 167.78 155.63 155.09 208.4 179.32 109.46 104.83 180.95 149.02 161.15 166.62 99.22 115.33 121.32 115.03 114.56 94.34 141.67 127.73 129.79 133.81 86.99 148.8 147.29 137.68 155.08 217.44 220.87 236.2 232.22
Bra025610 (FTRB)
 615.98 529.64 478.03 509.55 708.5 529.04 436.37 368.38 555.48 502.74 526.96 573.13 376.85 402.85 392.51 394.18 417.32 266.9 481.08 484.96 449.47 474.59 213.44 489.04 454.63 417.08 474.34 579.78 512.89 559.7 507.32
Bra026506 (TCP7)
 27.16 23.36 23.66 37.04 29.13 16.39 27.54 40.95 46.4 48.25 37.32 41.45 38.78 28.48 23.36 20.6 19.3 33.08 23.8 21.71 21.1 24.03 16.31 37.8 35.41 43.01 40.29 37.23 44.13 59.89 42.47
Bra027904 (MAH1)
 0.22 0.02 0.07 0.04 0.33 0.25 0.4 0.83 0.39 0.36 0.49 0.36 0.2 0.21 0.45 0.15 0.15 0.37 0.36 0.26 0.29 0.23 0.14 0.38 0.2 0.1 0.29 0.78 0.81 1.24 0.29
Bra028096 (IDS2)
 18.05 10.3 10.95 15.51 29.26 25.17 22.9 31.71 34.4 25.97 26.51 31.19 34.12 25.79 26.39 22.74 21.69 14.54 12.83 15.22 21.88 22.18 9.77 28.86 28.84 24.52 29.43 40.51 53.11 39.27 41.01
Bra029429 (TPXL2)
 0.88 0.28 0.39 0.27 1.15 0.32 0.5 1.29 0.89 0.57 0.54 1.03 0.94 0.03 0.4 0.14 0.07 0.51 0.28 0.22 0.1 0.2 0.38 0.34 0.19 0.34 0.43 0.63 0.83 1.19 1.03
23.25 18.48 21.82 20.27 21.37 18.93 14.48 15.47 17.85 13.59 15.92 17.39 9.33 15.33 17.74 12.66 15.57 13.67 14.14 14.04 12.56 16.57 6.87 14.42 14.24 16.63 15.44 23.64 21.86 16.66 11.51
161.33 104.27 98.82 125.81 153.92 128.84 131.73 116.51 136.47 131.69 137.19 134.16 89.96 83.32 75.35 98.97 99.16 45.37 107.93 131.9 116.51 122.72 44.42 134.95 136.84 129.35 139.7 172.99 175.32 142.22 158.92
Bra030635 (STO)
 54.44 39.36 35.85 41.07 45.25 27.94 35.59 43.78 38.59 22.72 30.36 30.96 23.86 31.92 24.33 12.98 15.0 35.3 33.33 24.12 28.95 23.87 35.84 46.89 41.36 34.3 43.2 65.18 66.73 58.41 33.52
Bra030653 (ACD31.2)
 47.07 49.0 27.77 29.63 65.79 28.75 27.9 35.86 55.77 37.89 36.0 54.77 10.54 20.55 27.25 10.95 9.18 14.33 28.25 26.26 19.7 25.4 6.36 31.67 30.32 26.32 36.03 37.58 40.6 60.08 57.09
Bra032941 (NUDX13)
 11.13 7.14 8.78 3.9 7.91 3.9 6.4 10.32 7.65 6.89 6.21 6.84 6.69 3.51 2.96 4.37 3.8 7.5 3.88 5.4 4.17 3.37 3.3 7.6 6.52 7.79 7.32 10.73 10.79 11.49 9.91
143.13 119.54 117.15 116.6 138.44 138.65 87.49 79.26 134.94 110.12 116.34 138.58 75.44 116.95 109.68 81.75 91.15 59.15 100.81 94.54 93.59 104.09 68.64 87.56 93.01 89.51 99.43 131.47 137.29 167.29 133.31
Bra034026 (ABA4)
 23.94 11.12 17.92 25.94 31.56 25.29 26.59 29.54 27.18 20.62 22.79 21.13 29.42 23.49 21.07 19.56 19.7 10.82 12.81 22.58 23.5 22.22 21.17 30.69 28.71 26.29 30.7 34.49 42.1 33.92 32.18
Bra034237 (CYP71B26)
 41.84 33.64 26.68 31.59 45.73 54.23 63.66 84.5 101.15 47.23 72.7 78.57 58.87 59.32 45.06 59.03 35.27 44.51 41.91 44.98 51.95 80.34 21.51 91.79 90.59 68.11 89.27 99.09 111.09 96.19 126.34
0.38 0.4 0.3 0.43 0.5 0.3 0.7 0.71 1.14 1.11 1.21 0.96 0.65 0.72 1.58 1.36 0.74 1.79 1.19 1.16 0.99 0.63 0.72 1.25 1.48 0.89 1.29 1.03 1.28 0.82 1.22
2.22 3.02 2.34 8.73 3.08 3.45 9.77 8.12 7.02 6.63 11.25 8.98 6.52 3.7 6.01 10.91 12.61 20.86 9.43 9.93 11.28 12.86 4.56 13.39 13.25 13.08 11.52 6.88 5.82 4.02 7.84
Bra036788 (LTP5)
 259.64 318.52 396.72 281.84 339.29 200.03 357.99 425.53 277.76 451.53 347.25 339.58 384.64 387.31 322.27 366.17 630.27 734.42 375.18 391.42 429.02 360.57 96.5 493.07 551.76 702.07 671.51 434.67 345.62 378.05 307.04
Bra037385 (TBL26)
 141.01 80.67 96.05 150.33 237.88 184.34 189.08 269.87 300.67 196.87 196.64 272.86 148.35 197.48 168.41 92.25 88.75 59.53 114.52 86.6 122.22 120.37 12.99 168.76 154.84 187.13 181.84 345.44 348.43 391.53 298.35
17.96 13.61 17.51 17.89 17.24 12.15 13.83 20.32 14.76 12.89 13.72 17.31 17.7 11.75 11.06 10.93 9.94 14.71 13.07 10.35 11.65 15.25 9.88 17.0 16.17 14.71 13.89 15.13 16.51 21.91 16.94
77.52 80.6 87.01 77.42 82.45 58.57 41.92 43.06 66.22 64.25 62.53 70.09 45.92 56.81 57.01 43.57 50.04 33.54 56.39 45.39 50.47 46.17 26.17 51.21 49.7 51.41 50.87 68.48 65.39 84.93 61.32
Bra039155 (scpl25)
 4.3 6.5 8.04 6.21 6.75 6.32 8.33 9.32 9.39 9.94 10.41 10.03 10.55 8.13 8.65 9.69 9.74 11.83 8.66 10.38 7.52 7.42 5.81 8.44 8.86 9.64 10.15 7.83 7.69 7.38 7.54
Bra039181 (PMI1)
 19.35 17.48 17.72 16.84 18.76 8.38 13.6 23.99 16.16 13.44 10.3 14.33 11.55 18.15 15.58 11.34 12.25 19.06 12.17 11.01 9.44 7.68 4.71 9.23 9.56 14.89 10.4 19.53 16.13 16.79 11.7
44.12 19.33 19.86 18.58 70.64 39.09 41.96 45.62 72.03 47.13 43.43 59.84 19.22 24.87 23.61 15.1 12.21 27.47 39.06 32.83 22.53 30.57 5.42 31.33 30.1 25.68 31.16 55.74 57.54 60.83 47.42
Bra040288 (GATA15)
 13.28 7.64 9.12 7.71 31.58 13.89 13.6 23.91 30.37 14.51 18.27 19.95 22.11 15.58 14.75 11.03 9.74 18.41 12.51 15.3 14.23 16.07 7.3 20.78 18.01 11.45 19.17 27.03 26.84 32.89 20.93
Bra040322 (AFO)
 7.83 9.2 10.23 5.8 4.55 2.27 8.68 12.54 9.76 7.56 6.15 9.9 14.23 2.39 1.8 3.41 3.83 13.18 2.05 4.18 5.12 4.89 4.81 10.24 11.06 11.01 11.15 9.7 11.33 11.17 11.91

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)