1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_85 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

 Transpose table  Download table
Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000018 (AKR4C9)
 3.81 2.04 2.31 1.39 13.35 11.46 3.22 2.98 4.48 4.25 3.91 4.11 6.27 12.25 10.97 4.88 4.1 10.24 5.15 3.61 5.01 5.53 56.46 2.14 2.03 1.54 1.56 2.61 1.98 1.42 2.32
Bra001865 (HSR3)
 0.16 0.48 0.59 0.7 2.42 8.27 3.14 2.05 5.06 4.48 3.61 5.34 3.86 28.36 28.17 8.57 5.37 30.86 4.99 4.66 4.81 5.91 87.36 2.1 1.41 1.23 1.03 1.9 2.76 1.2 1.77
0.18 0.27 0.41 0.11 0.34 0.34 0.08 0.07 0.17 0.15 0.09 0.15 0.06 0.49 0.43 0.21 0.08 0.26 0.14 0.14 0.09 0.17 1.53 0.18 0.11 0.06 0.14 0.12 0.22 0.21 0.3
Bra002594 (HAI1)
 0.12 0.08 0.06 0.0 1.58 1.2 0.13 0.07 0.39 0.22 0.16 0.08 0.3 7.22 9.35 0.66 0.29 3.67 0.96 0.2 0.06 0.04 37.27 1.47 0.78 0.37 0.58 1.16 1.58 1.31 2.03
1.26 1.56 1.87 1.46 3.94 4.89 1.29 1.37 1.94 2.27 1.42 2.08 4.11 5.65 6.56 3.08 2.48 3.56 2.79 2.78 2.71 2.45 16.83 2.5 1.94 1.35 1.58 1.54 1.66 1.88 1.99
2.59 2.88 3.36 3.36 4.63 4.07 2.29 1.79 2.7 2.65 2.06 2.46 1.98 4.75 5.09 2.78 2.36 2.78 2.45 2.55 2.2 2.7 13.77 2.68 2.62 3.56 2.22 2.08 3.02 3.86 3.49
Bra003789 (SID2)
 24.16 18.32 21.09 14.41 30.92 29.1 13.66 17.07 37.57 17.56 21.85 27.32 10.16 31.57 32.28 12.71 13.52 15.18 22.9 13.98 19.6 19.48 182.77 28.39 25.29 25.68 23.87 32.39 42.62 38.3 37.98
1.27 1.01 0.43 0.47 4.52 3.5 1.09 1.11 1.71 1.2 1.28 0.44 2.37 3.5 4.17 3.0 2.05 3.51 2.3 1.38 1.51 2.58 20.29 2.05 2.78 1.87 1.67 1.94 1.88 1.6 3.28
0.0 0.0 0.01 0.02 0.1 0.16 0.01 0.02 0.04 0.0 0.02 0.02 0.12 0.3 0.22 0.04 0.04 0.34 0.09 0.02 0.01 0.01 1.72 0.02 0.04 0.04 0.02 0.01 0.02 0.05 0.24
37.36 36.85 48.77 72.13 79.39 127.42 55.85 37.92 82.59 58.65 44.84 69.16 65.3 112.88 144.94 54.71 49.31 83.93 69.96 53.11 67.9 71.53 398.09 31.15 29.77 22.74 30.02 30.37 50.44 24.16 36.04
Bra005163 (AKR4C8)
 3.29 5.25 2.38 2.75 7.51 6.97 2.62 1.85 1.94 1.91 1.19 1.73 7.38 4.73 6.69 5.33 4.81 5.76 2.85 2.78 2.47 3.05 22.91 2.93 3.84 3.46 3.07 3.2 2.85 2.69 3.35
Bra005351 (EDL3)
 0.02 0.02 0.29 0.02 0.8 0.43 0.41 0.14 0.36 0.2 0.06 0.29 0.15 1.13 2.61 0.41 0.25 1.5 0.74 0.42 0.37 0.13 8.19 0.5 0.5 0.05 0.23 0.51 1.01 0.78 0.53
2.27 2.42 1.73 1.58 9.09 13.14 2.4 1.42 2.56 3.88 3.76 2.03 2.25 9.42 11.22 1.99 2.79 16.81 4.41 3.44 2.73 5.59 42.33 1.67 2.02 1.46 1.68 2.13 2.08 1.41 0.95
0.56 1.5 0.45 0.56 2.44 2.41 1.72 1.55 2.26 2.31 2.48 1.68 3.05 4.31 5.92 2.91 3.44 4.76 2.2 3.06 2.48 1.62 19.67 2.68 1.88 1.85 1.92 0.99 2.29 2.01 3.63
Bra006879 (ACX4)
 26.48 39.71 39.61 20.94 43.53 35.61 13.71 12.58 24.83 20.54 16.55 17.38 19.99 44.35 43.86 16.79 18.2 46.9 20.83 15.09 16.39 17.64 132.28 13.68 13.15 10.86 11.88 11.86 15.16 17.16 26.2
Bra008060 (TN6)
 0.1 0.14 0.02 0.06 0.32 0.34 0.05 0.08 0.28 0.2 0.16 0.1 0.13 0.47 0.47 0.11 0.19 0.25 0.18 0.05 0.15 0.15 2.65 0.39 0.29 0.28 0.33 0.32 0.5 0.27 0.36
Bra010049 (HSFB2A)
 0.64 0.46 1.75 0.4 3.32 6.16 0.5 0.28 1.5 0.81 1.21 1.04 2.82 5.31 6.09 3.71 2.6 3.52 1.35 2.19 1.88 1.77 28.91 1.85 1.45 1.52 1.09 0.75 1.3 1.05 2.75
0.31 0.36 0.42 0.12 0.78 1.44 0.29 0.24 0.81 0.27 0.25 0.33 0.38 1.93 2.04 0.29 0.24 2.67 0.48 0.43 0.2 0.26 7.53 0.2 0.12 0.1 0.1 0.1 0.38 0.29 0.73
Bra013628 (TPPG)
 0.87 0.79 1.33 1.66 7.63 6.87 8.31 6.53 6.42 7.83 6.13 6.21 7.27 10.92 9.76 11.64 8.04 7.93 6.36 6.93 6.88 8.3 60.88 5.35 5.45 8.3 4.87 4.38 5.09 3.83 3.14
Bra013744 (UGE2)
 2.71 2.77 2.65 2.98 5.73 4.98 2.95 2.3 4.3 4.13 3.28 3.47 4.16 5.96 6.23 4.61 3.83 5.49 3.73 2.56 2.66 3.92 20.48 4.43 4.41 5.24 4.53 4.29 4.96 4.38 5.15
Bra014189 (AIW2)
 0.19 0.03 0.19 0.14 1.99 1.77 0.26 0.13 0.84 0.44 0.55 0.38 1.09 1.38 3.24 2.52 1.28 0.92 0.97 1.25 0.57 0.65 7.46 0.51 0.65 0.26 0.35 0.36 0.83 0.62 0.52
Bra015435 (UGT1)
 1.54 0.63 0.31 0.64 11.9 21.54 16.72 9.28 11.5 7.41 7.71 6.05 9.68 21.36 21.03 17.25 10.56 11.97 15.01 15.52 13.98 9.47 100.39 13.49 11.62 6.15 7.72 12.85 25.27 7.09 12.36
Bra015579 (HON)
 0.22 0.0 0.05 0.02 0.93 0.98 0.33 0.04 0.64 0.32 0.34 0.46 0.26 3.69 5.31 0.79 0.5 3.55 1.07 0.49 0.26 0.5 16.7 0.63 0.7 0.23 0.48 0.24 0.65 0.84 1.03
Bra018116 (ATH1)
 3.68 3.47 3.09 2.54 4.58 4.7 2.0 1.92 2.81 2.23 1.8 2.64 2.08 6.0 5.16 2.35 2.24 2.57 1.78 1.99 1.8 1.73 17.87 1.74 1.61 1.47 1.7 2.09 2.93 2.11 2.43
0.15 0.26 0.23 0.18 0.78 0.69 0.36 0.16 0.5 0.45 0.28 0.41 0.27 0.99 1.01 0.45 0.29 0.67 0.41 0.23 0.46 0.35 3.07 0.26 0.24 0.13 0.25 0.3 0.3 0.43 0.28
8.26 8.42 7.95 6.95 41.21 53.37 18.26 11.88 19.15 15.2 13.79 15.3 18.13 57.11 63.11 26.62 21.56 67.25 24.34 19.86 20.56 18.15 252.63 24.99 23.83 17.09 22.12 28.07 36.87 21.89 51.31
Bra021580 (TBL41)
 0.15 0.28 0.01 0.09 1.83 1.71 0.18 0.21 0.24 0.4 0.38 0.14 0.14 0.7 0.44 0.17 0.41 1.05 0.35 0.1 0.25 0.35 9.32 0.48 0.36 0.32 0.63 1.0 0.71 0.34 0.17
1.5 0.96 1.05 0.62 3.67 3.23 0.86 0.75 1.75 1.57 1.12 1.11 1.7 2.79 3.71 2.42 1.64 5.0 2.07 1.51 1.12 1.29 15.8 2.27 1.3 0.69 1.47 1.55 1.8 1.9 2.45
0.16 0.15 0.26 0.14 0.52 0.75 0.37 0.22 0.11 0.35 0.2 0.2 0.27 0.78 0.62 0.39 0.27 0.97 0.58 0.35 0.43 0.31 3.83 0.57 0.69 0.6 0.63 0.6 1.07 0.69 0.74
Bra022660 (CB5-E)
 74.85 79.88 96.24 70.41 160.5 130.55 80.02 90.97 109.32 88.25 91.29 83.59 107.95 183.79 177.26 90.87 76.45 112.68 83.75 90.05 86.97 99.7 411.31 97.0 90.6 83.7 90.91 97.56 111.36 83.14 92.63
Bra022768 (NDA2)
 0.49 0.36 0.26 0.51 4.24 3.3 0.91 1.0 1.52 1.24 1.11 1.13 1.62 4.43 4.44 1.46 1.27 3.67 1.27 0.95 0.92 1.06 15.54 1.11 1.05 0.89 1.13 1.53 2.18 0.9 1.24
Bra022781 (UGT87A2)
 0.44 0.21 0.39 0.55 3.33 4.97 3.78 2.18 2.22 2.01 2.0 2.03 2.21 6.08 6.3 4.42 2.32 3.94 3.38 2.75 2.73 2.57 24.79 1.76 1.33 0.55 1.34 1.57 2.33 1.06 1.15
0.91 0.93 1.43 0.85 7.42 11.42 9.96 7.35 4.42 5.34 4.7 4.57 5.83 11.08 12.06 13.07 9.66 4.35 7.84 7.76 7.36 6.47 52.57 7.48 8.6 6.17 6.66 6.97 7.66 2.84 3.01
3.89 4.29 3.95 4.22 6.72 7.7 3.93 3.21 4.31 4.0 4.15 3.99 4.95 6.62 7.4 5.99 4.52 6.35 4.16 4.27 4.07 4.78 18.78 3.44 4.08 3.51 3.58 4.06 4.05 4.07 3.68
9.32 8.9 6.48 7.2 12.59 10.77 6.6 6.04 5.86 7.11 5.02 6.41 5.7 10.25 12.68 6.9 6.71 12.68 4.36 6.55 4.67 7.18 42.3 5.31 6.23 9.29 5.85 5.9 7.13 6.47 5.79
Bra027849 (ZCF37)
 0.0 0.14 0.35 0.1 0.21 0.88 0.07 0.0 0.02 0.26 0.02 0.44 0.1 0.87 0.89 0.23 0.12 0.33 0.51 0.04 0.02 0.44 5.78 0.12 0.0 0.0 0.07 0.02 0.16 0.4 0.02
Bra029201 (NAC102)
 4.01 4.37 2.33 1.42 29.61 29.15 4.19 2.89 10.23 3.81 3.93 4.68 2.14 24.24 22.99 6.96 4.41 10.76 9.29 3.25 3.28 4.46 139.08 10.46 8.92 4.83 7.74 21.12 31.89 18.37 14.35
Bra029476 (SDRA)
 20.31 18.14 22.58 15.36 48.33 37.36 17.97 13.76 19.9 20.97 21.68 16.49 21.5 44.48 48.26 21.74 21.17 38.73 21.81 17.0 15.5 19.93 148.33 17.76 17.03 17.23 16.93 19.88 18.57 23.29 19.52
Bra029496 (CRK36)
 0.22 0.4 0.3 0.03 2.28 1.31 0.09 0.33 0.54 0.42 0.72 0.16 0.37 2.21 2.69 0.83 0.25 1.03 0.65 0.43 0.07 0.49 8.87 0.18 0.17 0.05 0.17 0.29 0.35 0.05 0.04
Bra029608 (MFP2)
 1.39 1.95 1.48 1.0 7.13 5.76 1.16 1.35 2.84 2.9 2.96 2.64 2.24 6.35 5.89 3.02 1.87 5.57 2.97 1.9 1.96 2.62 30.64 3.83 3.28 3.01 3.54 4.7 6.22 5.11 5.75
Bra031574 (HON)
 0.43 0.62 0.36 0.17 0.89 0.99 0.23 0.21 0.53 0.39 0.27 0.33 0.28 1.54 1.82 0.31 0.28 1.93 0.6 0.31 0.48 0.41 7.79 1.25 0.97 0.91 0.5 0.78 1.65 1.11 1.67
0.9 0.92 0.57 0.81 2.99 2.31 0.47 0.52 0.48 0.64 0.64 0.77 1.4 2.81 3.02 1.19 0.99 2.19 0.82 0.87 0.9 0.87 9.45 0.47 0.72 0.65 0.61 0.47 0.57 0.41 1.5
5.69 4.48 5.95 8.46 15.0 12.28 3.08 3.87 6.21 4.94 4.53 5.15 4.19 13.4 15.75 4.09 3.41 15.57 4.8 2.51 3.16 3.12 62.36 5.68 4.75 4.28 5.22 7.83 8.85 6.86 7.17
Bra033071 (AIG2)
 0.41 0.46 0.28 0.04 2.63 7.98 0.36 0.28 0.44 0.64 0.55 0.69 1.62 15.47 16.74 0.65 0.85 9.3 0.94 0.61 0.18 0.99 66.23 1.31 1.06 1.44 0.85 3.51 2.05 0.63 1.8
0.75 1.01 1.21 0.75 2.63 1.74 0.82 0.38 1.37 0.2 0.58 0.5 0.58 3.72 2.67 0.74 0.1 3.31 0.35 0.71 0.74 0.29 12.02 0.3 0.29 0.08 0.14 0.15 0.28 0.18 0.66
Bra036698 (GCS)
 0.34 0.21 0.81 0.41 1.09 0.49 0.31 0.34 0.29 0.34 0.33 0.34 0.59 0.44 0.52 0.41 0.26 0.88 0.33 0.29 0.28 0.28 2.65 0.14 0.18 0.34 0.2 0.3 0.19 0.16 0.31
Bra038949 (XGD1)
 2.11 1.79 2.03 0.59 6.45 10.82 2.17 1.6 2.94 3.33 2.14 2.28 1.82 12.64 9.85 2.63 2.46 11.11 3.76 3.18 2.35 4.05 29.76 1.96 2.27 1.04 1.87 2.9 3.36 1.81 1.87
Bra040472 (ARO2)
 0.1 0.13 0.21 0.0 0.3 0.16 0.0 0.01 0.05 0.01 0.05 0.05 0.06 0.38 0.16 0.01 0.02 0.79 0.05 0.0 0.03 0.11 1.73 0.06 0.0 0.02 0.0 0.08 0.04 0.06 0.02

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)