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Heatmap: Cluster_55 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000052 (PYL4)
 32.33 62.42 56.73 57.51 13.4 16.44 11.05 16.93 8.74 21.12 23.75 15.06 20.76 5.43 3.22 9.35 21.21 15.94 9.28 16.77 22.65 21.47 16.95 14.35 19.19 57.34 21.82 19.93 22.93 17.5 8.41
11.19 10.96 10.84 9.92 12.23 11.31 4.4 4.14 5.37 5.59 5.16 5.75 2.98 6.92 6.72 4.97 4.5 10.85 6.91 4.5 4.91 5.43 12.36 6.24 7.42 8.38 6.78 9.37 8.84 9.44 5.71
3.78 3.47 6.0 3.79 1.85 0.97 1.29 1.72 2.57 1.82 2.14 2.82 2.54 0.93 1.07 1.31 1.37 1.55 0.81 0.99 1.06 1.03 0.78 0.83 1.42 1.88 1.46 1.36 1.35 3.5 1.93
5.64 5.01 5.57 6.22 4.57 2.57 2.7 4.32 3.12 3.86 3.55 3.89 3.61 3.88 2.88 2.89 3.49 4.54 2.93 2.67 2.58 2.94 2.2 2.03 2.37 4.14 2.24 3.45 2.81 4.15 3.69
82.26 84.85 83.84 88.94 64.52 8.6 13.19 21.18 11.92 25.79 13.37 22.95 32.72 9.97 5.55 8.41 21.47 22.76 7.92 12.31 12.2 9.3 19.02 10.48 9.16 72.12 11.3 16.94 14.36 65.91 30.84
Bra001721 (ATL77)
 36.99 60.93 55.28 51.57 12.84 10.36 10.69 15.45 16.36 12.94 17.65 19.05 8.08 8.16 7.03 10.46 11.59 3.68 10.09 12.18 12.46 16.67 15.05 10.78 15.33 22.7 15.87 16.55 18.27 37.52 17.22
Bra001774 (CYP705A15)
 9.2 10.23 16.29 6.2 5.53 0.95 0.66 1.92 3.36 1.5 0.56 1.24 0.64 0.91 1.27 1.07 0.52 0.93 1.37 1.31 0.67 0.71 2.79 0.94 1.52 1.3 1.51 1.24 1.45 7.56 3.76
Bra002061 (RHA3A)
 44.13 42.93 53.27 35.9 22.23 13.44 10.3 7.85 23.31 16.71 21.43 22.76 10.45 7.6 10.26 12.39 11.02 2.92 8.35 16.88 16.77 18.23 7.46 14.85 16.42 23.38 18.9 17.7 20.62 26.78 22.92
173.21 207.74 226.61 248.22 33.98 44.89 52.4 53.27 50.37 51.71 59.02 65.6 34.48 25.71 26.87 58.52 62.46 17.84 28.95 50.21 44.18 55.22 32.56 42.54 52.55 165.31 57.46 86.17 80.27 134.07 68.34
Bra002709 (COL5)
 146.08 118.72 136.28 199.2 24.15 22.84 39.9 46.86 40.15 25.64 43.54 49.45 22.02 15.77 14.57 13.55 14.72 42.67 25.38 32.62 28.55 36.03 30.87 44.68 48.18 95.17 52.06 46.39 47.49 90.44 48.18
18.46 24.37 31.29 23.41 4.37 3.23 4.25 9.56 11.3 7.33 11.91 14.91 8.3 2.51 3.44 4.37 4.39 4.88 10.69 14.93 11.89 10.1 4.54 8.39 11.87 22.05 13.24 6.48 9.51 18.23 16.76
Bra003640 (LZF1)
 5.19 3.37 3.69 3.48 2.84 1.46 0.63 1.27 1.87 0.91 1.4 1.4 0.94 1.02 1.14 0.75 0.68 2.15 0.41 0.78 0.54 0.95 3.23 1.4 0.87 2.37 1.03 2.89 2.92 4.2 2.48
21.61 19.72 18.35 17.3 5.71 4.31 9.22 11.8 11.1 11.72 11.08 17.23 5.55 2.24 2.23 4.95 6.53 7.52 11.78 7.72 8.71 9.56 6.39 9.49 9.57 9.78 11.64 9.74 8.73 16.15 11.85
Bra004035 (BBX14)
 163.04 198.9 188.13 187.78 91.72 97.48 59.14 65.36 58.25 78.52 88.71 64.35 55.57 45.82 44.56 73.58 98.76 55.21 73.84 81.94 82.02 92.92 13.32 90.61 98.24 153.83 97.92 78.54 99.19 89.4 91.92
Bra004244 (PSPM3)
 20.78 21.45 25.7 22.72 11.82 10.62 16.3 17.9 12.53 12.37 14.58 15.69 14.06 7.8 6.6 10.58 11.33 6.23 8.76 10.5 12.57 12.43 5.61 12.12 12.9 14.06 12.85 14.63 13.62 16.9 16.77
Bra004604 (SIB2)
 40.86 48.42 60.08 55.42 35.05 11.78 9.16 14.9 17.91 20.58 19.26 21.42 5.88 13.29 12.97 19.05 13.18 29.82 17.94 14.55 12.87 16.09 10.38 6.46 7.01 27.19 12.58 23.04 16.42 21.46 8.37
Bra005611 (OFP16)
 37.54 42.79 43.55 44.66 17.36 5.37 7.82 9.71 13.47 9.51 12.73 15.6 4.48 2.74 1.19 2.41 3.01 1.28 4.85 6.87 5.48 6.06 0.79 7.74 9.92 36.56 11.94 14.86 16.0 25.17 13.56
Bra005997 (MYBS2)
 38.22 39.92 47.86 30.96 27.5 10.25 3.24 3.83 8.12 12.42 10.15 13.2 5.12 4.43 3.39 5.32 5.55 2.9 5.66 6.7 7.29 8.4 2.36 4.04 6.74 28.69 6.33 6.77 8.57 14.81 9.02
Bra006226 (KYP)
 20.14 13.09 11.08 12.45 9.21 2.29 1.33 5.12 5.12 4.37 2.97 5.74 5.04 1.8 2.06 1.5 2.57 5.94 2.66 2.05 1.77 2.16 4.0 3.17 2.92 13.1 3.37 7.43 5.92 12.96 7.63
Bra008448 (RTL1)
 33.36 35.4 32.3 31.98 16.61 11.58 11.4 13.49 15.46 14.74 18.42 19.5 15.5 10.98 10.29 11.59 12.98 13.28 10.08 13.02 14.87 17.42 13.65 13.36 12.82 21.78 16.6 12.77 15.02 16.78 17.43
Bra008659 (NIK1)
 17.28 15.34 15.67 14.92 13.12 4.94 5.0 7.13 6.32 7.46 7.67 7.24 11.36 7.81 6.38 7.15 6.3 10.03 5.45 5.0 5.48 5.23 5.77 5.21 5.31 9.15 5.68 8.02 7.76 7.62 5.45
Bra009346 (MYBS2)
 28.2 27.49 31.96 22.9 18.12 8.71 5.98 8.71 9.74 10.01 12.46 11.65 4.83 4.91 7.27 4.55 5.39 6.09 4.29 6.99 5.95 7.88 6.35 6.76 7.95 23.68 10.54 10.25 12.51 20.64 14.49
Bra009609 (FIP)
 2236.15 2634.44 2998.5 2965.73 531.66 365.92 1158.94 1424.96 1145.61 1284.98 1653.82 1874.87 974.15 234.85 191.27 806.62 915.12 163.44 425.94 944.43 1254.18 1021.26 205.86 1075.77 1335.21 1701.94 1588.33 908.5 1191.74 2485.67 1530.43
Bra009620 (SIS)
 214.98 234.32 255.89 237.32 65.67 17.82 13.33 17.03 61.27 24.79 56.89 63.51 5.63 6.09 5.9 2.85 4.81 11.45 9.56 16.68 16.56 26.22 46.84 56.34 57.43 103.08 59.65 65.97 93.48 118.93 80.64
Bra009985 (CYSD2)
 2.52 3.14 2.99 4.13 1.68 0.5 0.83 0.74 0.31 0.24 0.31 0.17 0.28 0.31 0.03 0.28 0.06 0.13 0.01 0.17 0.17 0.19 0.12 0.33 0.38 2.75 0.66 0.59 1.54 1.03 0.56
Bra010807 (CAB1)
 7415.02 7127.48 9000.22 8819.09 2570.74 2405.94 5244.4 5796.92 4831.54 4994.19 4861.59 4830.35 3088.21 1803.46 1263.49 3378.54 3685.05 1991.81 4014.68 3632.81 4379.78 3982.28 389.17 3104.95 3238.45 3628.29 3286.27 4526.57 3859.75 6191.4 3846.63
Bra011540 (CIB1)
 46.27 43.44 48.52 50.72 17.99 13.97 26.6 37.21 23.47 25.85 27.9 26.78 21.55 7.83 7.18 13.84 15.57 12.4 19.65 24.35 24.82 19.53 20.87 17.62 19.83 28.74 23.18 25.21 27.45 42.18 33.28
5.56 6.53 5.64 4.99 7.32 5.38 2.64 3.99 4.67 3.69 3.45 4.28 2.38 4.83 5.09 3.42 2.76 5.03 3.63 3.21 3.04 3.36 5.57 3.18 2.36 5.26 3.91 4.73 4.9 7.08 2.32
694.32 742.68 779.53 699.21 266.41 211.85 395.66 524.8 470.95 456.24 503.13 562.77 404.51 150.12 119.65 293.57 353.29 195.97 276.88 342.68 352.89 355.96 60.49 328.79 347.12 413.57 382.64 340.11 369.0 539.22 437.37
Bra012714 (INT4)
 13.63 14.89 14.9 12.86 3.66 2.02 2.4 3.86 6.12 6.27 7.82 8.28 4.76 0.85 0.8 2.08 3.03 0.55 0.89 2.55 3.38 3.62 2.4 3.11 3.9 7.42 5.87 3.62 6.74 12.27 9.16
Bra012779 (DXS)
 320.37 382.44 462.18 355.27 61.96 52.9 63.6 92.89 171.63 161.01 210.27 242.95 93.38 25.15 26.43 103.38 101.7 46.72 89.81 93.59 83.5 91.64 26.57 128.82 140.99 188.03 140.91 149.65 195.82 288.85 232.74
Bra013275 (IP5PII)
 10.47 8.82 7.39 7.09 9.23 7.21 2.18 2.87 3.12 2.76 2.86 3.71 2.23 4.32 3.53 1.43 1.88 8.21 2.59 2.47 2.69 2.86 9.99 2.66 2.53 8.8 2.49 7.5 5.43 10.28 4.79
122.45 130.98 167.47 99.04 42.28 49.42 72.59 52.42 57.08 65.95 107.27 84.75 44.62 36.62 41.14 39.51 43.61 24.07 51.66 72.16 69.02 78.35 30.49 69.15 82.43 121.34 93.12 41.5 65.53 87.22 109.29
Bra013754 (NLP7)
 15.59 15.84 16.52 14.71 1.67 1.03 3.85 5.72 3.92 5.35 5.98 8.54 3.37 0.33 0.74 2.36 3.38 3.45 3.55 3.53 2.91 4.46 7.49 4.38 5.47 9.68 7.59 4.46 5.08 12.66 8.96
Bra013970 (RCP1)
 86.78 79.94 74.54 80.88 44.69 21.33 40.93 59.47 51.32 45.26 43.24 73.6 33.77 13.58 13.27 23.05 31.21 38.68 43.68 33.47 32.62 39.28 6.37 31.37 31.3 33.01 37.38 41.21 28.44 67.54 38.92
Bra014244 (BPH1)
 19.76 18.31 23.04 16.12 10.38 6.39 9.0 14.31 11.99 11.38 13.99 14.65 9.07 3.49 3.28 6.84 7.76 4.93 6.91 6.64 7.84 9.3 3.87 7.75 8.64 10.33 9.57 11.0 12.2 14.63 13.78
Bra014983 (RALFL24)
 97.25 117.45 118.95 86.0 37.22 30.48 29.23 40.26 35.43 43.02 50.18 48.84 31.71 19.13 13.21 29.05 28.52 26.43 24.12 38.57 40.68 38.53 14.05 37.72 35.41 88.92 48.47 40.29 43.54 61.3 52.79
67.78 68.41 74.24 72.08 35.37 12.06 12.88 19.33 27.78 28.99 36.09 34.19 16.77 11.51 7.57 9.55 11.97 7.81 10.98 16.76 17.03 21.22 2.7 6.91 9.82 60.99 13.17 15.9 20.61 29.11 10.02
10.57 13.55 12.96 11.79 4.5 1.78 1.43 1.9 2.52 3.07 2.28 2.9 1.29 1.94 0.81 2.0 1.14 0.9 1.14 1.27 1.98 2.13 3.58 3.75 4.29 5.78 4.2 3.31 4.08 5.87 5.08
Bra016372 (RAB7)
 182.74 209.31 221.08 199.52 89.33 85.13 119.14 118.0 105.64 103.19 125.76 110.8 86.34 65.15 62.33 94.35 109.69 53.23 79.64 113.76 119.0 122.37 24.69 88.26 99.54 119.64 104.52 91.67 106.49 105.7 102.83
21.58 19.97 11.62 12.75 9.03 3.83 1.34 3.86 4.63 2.9 3.0 3.82 1.6 4.29 3.3 1.62 1.99 1.73 2.81 2.65 3.22 2.04 2.55 3.71 3.73 12.09 4.01 7.25 6.04 13.52 7.02
Bra017125 (PYL4)
 127.33 116.29 108.62 127.52 71.43 74.84 34.03 33.13 38.14 59.22 65.94 54.96 47.89 42.99 36.22 41.32 53.95 80.96 54.18 48.25 62.87 52.52 53.12 55.94 61.76 131.53 60.01 63.39 72.77 58.98 40.32
Bra017946 (Kin7.1)
 11.18 8.12 6.87 7.61 5.08 3.01 2.18 3.72 4.13 3.31 3.77 3.2 4.18 4.65 4.34 3.06 2.99 4.97 3.37 2.8 2.59 2.53 2.12 4.25 4.56 7.84 4.0 5.84 5.1 5.93 5.95
Bra018046 (HAP5A)
 78.24 90.19 102.91 71.99 31.81 17.98 12.37 8.15 39.31 39.69 61.07 44.36 24.83 9.83 8.73 24.95 22.85 6.09 18.94 30.12 26.59 35.36 13.29 21.87 25.75 35.68 29.53 18.57 31.41 40.44 32.46
Bra018347 (TBL45)
 23.42 23.77 30.69 30.87 9.74 2.24 4.86 5.96 5.23 11.06 10.65 4.88 7.97 3.71 2.79 7.45 7.62 17.12 5.64 7.39 9.19 7.26 3.95 4.81 4.19 8.12 5.21 11.53 6.16 3.41 1.82
Bra018454 (WLIM1)
 87.77 99.67 144.89 70.1 75.05 20.32 19.4 29.67 43.04 37.89 41.01 39.07 32.73 17.83 27.18 23.85 22.01 31.89 35.33 34.38 28.5 40.06 32.27 36.85 35.72 48.81 44.47 35.95 36.64 68.73 55.34
Bra018619 (ALB1)
 221.69 225.09 238.95 216.2 101.96 84.24 132.19 137.47 138.07 155.07 152.39 167.27 123.86 54.56 53.45 116.04 129.1 55.04 95.58 123.11 111.57 119.51 34.84 89.94 97.97 115.28 99.46 103.47 98.84 135.24 118.64
Bra018781 (ATL78)
 4.84 4.51 3.07 3.94 1.25 1.01 0.22 0.43 0.42 1.16 0.47 0.53 0.18 0.32 1.36 0.67 0.6 1.34 1.08 0.66 0.9 0.71 0.6 0.54 0.38 3.32 0.76 0.26 0.31 1.53 0.42
Bra019251 (NLP7)
 25.36 21.81 24.39 23.94 4.61 5.16 12.5 12.35 10.56 13.47 15.3 15.7 10.83 2.69 3.38 10.84 13.75 13.7 11.5 13.42 9.95 12.48 9.64 10.05 11.88 19.92 14.04 7.19 9.63 16.31 15.6
Bra019264 (PGF13)
 34.64 30.98 33.25 31.64 27.69 4.96 6.5 12.44 10.91 20.11 15.6 16.43 12.2 9.68 7.66 12.17 12.78 25.34 12.46 11.97 13.63 8.8 6.81 8.23 10.8 18.51 12.74 20.74 15.2 23.89 12.03
Bra019357 (ACR7)
 9.51 7.03 7.02 8.1 9.69 8.35 3.22 2.75 5.11 3.85 3.74 5.16 1.55 3.8 4.78 1.96 2.18 4.01 2.47 2.59 2.81 2.57 5.61 2.81 2.97 7.08 3.26 7.02 7.19 9.16 4.04
Bra020425 (COL5)
 106.96 123.82 115.11 124.62 36.74 35.34 42.18 39.89 52.75 39.34 61.22 64.75 33.87 44.8 31.33 25.03 28.18 38.89 35.25 45.7 46.93 47.64 65.15 58.02 63.64 89.08 68.99 46.75 58.43 79.75 44.09
44.65 49.37 46.91 43.43 14.1 12.86 15.66 14.19 18.15 19.89 23.69 21.64 15.6 8.25 8.8 18.22 18.55 5.5 10.88 22.55 19.78 21.63 5.93 16.86 20.11 26.96 23.12 13.18 17.84 18.32 24.02
Bra023958 (IAA29)
 3.44 1.94 5.75 3.29 1.1 0.84 0.54 1.06 1.94 1.31 1.72 1.03 0.55 0.6 0.33 0.58 0.5 0.16 1.03 1.71 1.21 1.14 0.13 1.3 1.3 2.1 1.89 1.21 1.82 3.18 2.77
Bra029372 (FTRA1)
 680.04 695.59 734.83 610.36 349.41 338.46 412.25 398.69 340.76 345.47 404.14 353.8 354.14 257.98 230.72 297.08 357.53 175.02 364.19 505.8 439.78 385.9 208.74 406.7 403.36 437.92 442.92 328.57 309.27 411.71 435.28
83.56 106.77 97.1 90.03 7.26 4.27 9.21 13.68 15.0 18.45 19.99 30.27 7.1 1.69 2.86 5.31 8.25 3.18 7.48 8.36 8.29 11.42 3.08 12.09 15.16 36.31 17.63 16.83 16.92 64.18 28.53
Bra032273 (BBX17)
 13.22 16.06 23.23 9.62 10.08 4.56 2.64 3.41 5.93 5.9 6.82 4.85 2.84 3.23 3.4 2.56 3.97 0.85 6.17 4.87 4.4 5.65 1.04 4.7 4.98 6.73 5.56 7.64 6.98 6.25 3.81
23.55 27.45 17.12 19.99 13.09 9.18 5.23 5.7 8.95 11.07 12.6 11.93 6.52 8.28 8.24 8.36 6.97 4.69 5.47 7.84 7.89 9.13 4.74 5.0 6.49 19.0 9.38 7.59 12.4 16.34 13.19
Bra033925 (BBX14)
 163.91 192.86 174.64 160.19 43.57 43.71 50.88 52.03 56.56 67.21 83.72 59.15 43.3 14.69 22.8 65.81 60.04 16.88 48.87 72.55 69.8 89.12 7.95 53.45 71.16 120.81 74.26 51.12 61.88 69.55 70.63
Bra035023 (OSU1)
 7.31 6.03 7.94 4.22 4.08 1.39 1.36 1.8 2.64 2.67 2.9 2.9 1.44 1.6 1.49 1.56 1.55 2.01 1.67 1.75 1.76 1.87 3.17 2.01 2.29 4.08 2.73 2.45 2.73 3.63 3.06
Bra036731 (GTL1)
 52.98 55.77 57.78 57.17 24.29 16.82 14.99 18.64 20.1 25.15 27.4 27.17 13.53 9.02 7.47 14.87 14.64 7.05 11.72 18.21 20.9 21.96 4.89 13.55 15.43 42.73 19.11 16.95 17.88 22.39 13.87
Bra037761 (PSAN)
 6023.21 6338.84 7022.85 6785.71 3052.72 2584.15 3602.83 3707.13 4135.49 4078.58 4370.66 4201.01 3235.82 2086.99 1463.84 2541.19 2769.92 1933.91 2865.91 3251.55 3564.39 3485.56 427.82 2413.08 2481.85 2561.75 2475.43 3047.59 3523.06 3048.3 2465.46
Bra038469 (INT4)
 3.2 3.26 3.55 3.61 1.64 0.54 0.46 0.92 1.55 1.14 1.14 1.89 1.86 0.6 0.2 0.35 0.6 0.26 0.28 0.55 0.47 0.37 0.95 0.88 0.61 2.67 0.87 1.21 1.98 3.34 2.12
68.7 67.69 63.83 60.3 12.52 19.88 25.64 22.73 17.34 30.11 24.4 30.41 9.92 10.72 10.81 16.24 26.98 6.17 10.88 16.37 23.5 23.75 6.89 21.5 25.33 39.07 25.05 19.81 17.94 39.09 31.6
5.91 4.86 11.04 2.52 1.43 1.67 0.73 2.44 2.78 2.34 2.46 3.43 1.27 0.98 1.33 1.64 1.58 0.79 2.03 1.41 2.0 3.28 1.56 1.94 2.16 3.49 2.77 3.04 3.2 7.0 4.72

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)