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Heatmap: Cluster_201 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000532 (MOC1)
 -0.87 -1.01 -1.29 -0.78 0.24 0.35 0.25 0.4 -0.3 0.0 0.12 0.14 1.17 0.54 0.71 0.43 0.62 0.15 0.12 0.39 0.2 0.2 0.45 -0.67 -0.68 -1.2 -0.63 -0.62 -1.18 -1.11 -0.5
-1.63 -0.9 -1.5 -1.02 -0.41 -0.41 0.68 1.26 -1.01 -0.44 -0.48 -0.61 2.3 0.75 1.06 1.19 0.84 0.72 -0.86 -0.17 0.23 -0.04 0.37 -2.03 -2.17 -2.11 -2.1 -1.96 -3.01 -2.56 -1.34
Bra001694 (WOX1)
 - -4.39 -3.29 - -1.44 -2.54 0.55 1.37 -0.98 0.61 0.22 1.03 2.41 -3.53 -3.56 1.07 0.86 1.3 0.94 0.94 0.64 1.0 0.44 - -2.88 - -4.69 -2.61 - -4.75 -4.72
-4.16 -2.57 -0.72 -1.82 -0.48 0.02 0.41 1.43 -0.52 0.07 0.51 0.31 1.7 1.25 -0.16 0.87 0.89 0.9 0.97 0.84 -0.03 1.06 -2.72 -2.07 - - - -3.0 -3.78 -3.86 -2.32
Bra002520 (HTB4)
 -0.72 -0.61 -0.29 -0.42 0.3 0.01 0.15 0.13 -0.07 0.15 0.14 0.17 1.75 0.28 0.39 0.5 0.49 1.14 0.11 0.14 0.34 0.38 0.1 -1.35 -1.23 -1.7 -1.43 -1.57 -1.71 -1.9 -1.67
Bra003210 (UBC7)
 -1.11 -1.18 -1.25 -1.11 0.46 0.5 -0.03 0.43 0.16 -0.09 -0.18 0.04 0.67 0.8 0.57 0.11 0.01 0.33 0.16 0.2 0.28 0.23 0.4 -0.02 -0.49 -0.77 -0.39 -0.31 -0.4 -0.83 -0.29
-1.05 -0.73 -1.2 -0.95 -0.14 0.23 0.25 0.66 0.13 0.07 0.05 0.19 0.59 0.7 0.87 0.56 0.7 0.81 0.17 -0.11 -0.03 0.08 0.58 -0.95 -0.82 -1.39 -0.76 -1.15 -1.08 -0.89 -0.19
Bra006969 (STV1)
 -1.09 0.04 -0.18 0.12 -0.13 -0.19 0.31 0.89 -0.55 -0.13 -0.13 -0.64 1.53 0.43 1.04 0.85 0.66 0.55 -0.27 0.18 0.49 0.34 0.58 -1.59 -1.7 -1.73 -1.77 -1.63 -2.42 -2.54 -1.72
Bra008969 (NAA50)
 -0.69 0.41 -0.85 -0.56 0.01 -0.23 0.23 0.84 -0.46 -0.01 -0.12 -0.44 1.23 0.4 0.29 0.37 0.77 0.36 -0.48 -0.63 0.09 -0.33 0.58 -0.38 -0.3 -0.43 -0.51 -1.09 -0.85 -0.8 0.16
Bra009908 (SAV6)
 -1.99 -0.63 -1.15 -0.45 0.6 0.2 -0.05 0.2 -0.51 -0.34 0.03 -0.33 0.92 0.33 0.53 0.36 -0.02 0.32 -0.29 0.01 -0.07 -0.02 0.69 -0.16 -0.08 -0.34 -0.2 0.28 -0.53 -0.61 0.36
Bra009949 (HTA7)
 -1.46 -1.27 -0.94 -1.34 0.48 0.3 0.23 -0.21 0.01 0.04 -0.3 -0.17 1.04 0.34 0.49 0.22 0.09 0.3 0.1 0.07 -0.14 0.13 0.61 0.2 0.11 -0.93 -0.21 -0.01 0.04 -0.48 -0.47
-0.81 -0.99 -1.07 -1.16 0.08 0.14 0.5 0.73 -0.28 -0.19 -0.41 -0.21 1.37 0.09 0.49 0.31 0.63 0.05 -0.08 0.19 0.01 -0.02 0.94 -0.41 -0.26 -1.11 -0.55 -0.74 -0.69 -0.41 -0.19
Bra010843 (IRP5)
 -2.14 -2.01 -1.13 -1.9 -1.44 -0.12 0.45 1.17 -1.19 -0.66 -0.09 -0.35 1.63 0.82 0.95 1.18 0.9 1.06 -0.06 0.38 0.18 0.32 0.66 -1.67 -1.16 -1.77 -1.55 -1.81 -2.43 -1.84 -0.42
-1.16 -1.33 -1.26 -1.14 -0.07 0.17 0.13 0.52 -0.45 0.39 -0.06 -0.17 0.45 0.47 0.55 0.54 0.24 0.8 0.19 0.14 0.23 0.02 0.1 -0.35 -0.09 -1.02 -0.26 -0.36 -0.28 -0.16 0.18
Bra011541 (GVS1)
 -0.95 -0.69 -1.15 -1.47 -0.0 -0.3 0.24 0.51 0.28 0.56 0.2 0.39 0.97 0.18 0.25 0.77 0.18 0.83 0.54 0.08 -0.32 0.28 -0.03 -0.56 -0.64 -1.12 -0.6 -0.9 -0.84 -0.11 -0.67
-1.14 -0.33 -0.17 -0.56 -0.71 -0.49 1.25 0.99 -1.89 -1.18 -0.99 -2.02 2.63 -0.31 0.49 1.53 1.32 0.56 -1.15 0.24 0.08 0.09 -0.01 -2.83 -3.07 -2.66 -3.01 -3.02 -3.47 -4.22 -2.22
Bra011883 (CPP1)
 -0.01 -0.74 -0.64 -1.2 0.3 0.47 0.3 0.36 -0.08 0.36 0.14 0.67 1.47 0.4 0.7 0.73 0.46 -0.38 -0.44 0.22 0.17 0.45 -0.09 -0.96 -0.8 -1.56 -0.92 -1.14 -2.05 -1.6 -1.18
Bra012775 (CASPL1E1)
 -3.78 -2.37 -1.2 -0.3 -0.58 -0.05 0.33 1.16 -0.17 -0.06 -0.42 -0.54 2.29 1.06 1.05 1.09 0.99 1.98 -0.58 -0.22 -0.35 0.19 -1.59 -4.65 -7.42 -6.04 -5.37 -4.85 -6.23 -5.34 -4.69
-0.44 -0.23 -0.2 0.17 -0.52 -0.24 0.15 0.59 -0.82 -0.04 -0.39 -0.02 0.66 -0.04 0.28 0.77 0.74 0.93 0.06 0.34 0.13 -0.08 -0.23 -0.49 -0.45 -0.44 -0.31 -0.63 -1.05 -0.7 0.01
Bra014713 (HSP91)
 -0.53 -0.04 -0.33 -0.38 -0.17 0.05 0.28 0.54 -0.36 -0.16 -0.34 -0.24 0.52 0.27 0.47 0.6 0.41 0.46 -0.08 0.15 0.11 0.07 0.48 -0.39 -0.29 -0.48 -0.32 -0.51 -0.67 -0.57 -0.08
Bra015832 (SAUR51)
 -1.07 -1.93 -3.32 -2.48 -0.56 0.53 0.62 0.59 0.33 0.66 0.4 0.41 1.85 0.03 -0.84 0.73 1.37 -0.27 -0.3 -0.36 0.88 -0.21 -0.1 -0.34 -0.56 -3.84 -0.16 -1.56 -1.54 -2.06 -1.01
Bra016209 (PMAT2)
 -2.91 -2.74 -1.57 -1.65 -2.57 -1.27 0.53 0.45 -0.09 0.63 0.42 0.47 1.57 0.88 0.47 0.76 0.37 0.68 -0.17 0.51 0.35 0.27 -0.43 -0.7 -1.49 -0.77 -0.33 -1.19 -0.58 -0.41 -0.11
Bra016702 (WHY1)
 -0.46 -0.65 -0.76 0.26 -0.12 -0.03 0.03 0.47 -0.74 -0.24 -0.72 -0.15 1.21 -0.08 0.21 0.33 0.63 0.93 0.19 0.17 0.08 -0.07 0.78 -0.47 -0.43 -0.57 -0.54 -0.66 -1.02 -0.87 -0.06
Bra018301 (H1.2)
 -2.29 -1.74 -0.98 -2.22 -0.02 0.43 0.42 0.31 0.14 0.19 0.16 0.06 0.84 0.29 0.5 0.28 0.27 0.91 0.16 0.38 0.02 0.29 0.4 -0.16 -0.38 -1.09 -0.44 -0.8 -0.36 -0.51 -0.3
-1.42 -0.63 -0.4 -0.2 -1.48 -0.68 0.44 1.4 -0.9 0.04 -0.3 -0.37 1.63 0.47 0.34 0.71 0.91 0.71 -0.79 0.3 0.18 0.24 0.64 -1.1 -0.94 -0.76 -0.76 -1.56 -2.23 -1.64 -0.72
-0.64 0.01 -0.75 0.3 -1.19 -0.37 0.44 1.11 -1.16 -0.34 -0.4 -0.79 1.76 0.78 0.7 0.17 0.59 0.89 -0.86 0.16 -0.05 -0.25 1.24 -1.28 -1.03 -1.07 -1.19 -1.35 -2.21 -2.2 -0.92
Bra021654 (H1.2)
 -2.37 -2.07 -1.18 -1.96 -0.07 0.61 0.16 -0.11 0.45 0.31 0.24 -0.08 0.78 0.51 0.23 0.44 0.35 0.51 -0.06 0.48 -0.06 0.12 0.62 0.14 -0.15 -1.18 -0.4 -0.64 -0.15 -0.57 -0.18
Bra022156 (FPS1)
 -0.51 -0.6 -0.4 -0.61 -0.4 -0.44 0.1 0.31 0.4 0.2 0.23 0.16 0.71 0.46 -0.1 0.33 0.18 -0.1 -0.11 -0.0 0.16 0.1 -0.36 -0.1 -0.28 -0.09 -0.27 0.18 0.15 -0.25 -0.18
Bra023417 (HPAT3)
 -0.51 -0.32 -0.17 -0.06 0.28 0.15 0.37 0.54 -0.38 0.09 -0.15 -0.09 0.72 0.28 0.61 0.59 0.47 0.42 -0.07 0.08 0.08 0.12 0.53 -0.68 -0.67 -0.56 -0.64 -0.9 -1.1 -0.88 -0.77
Bra024028 (ABAPT8)
 -1.81 -0.36 0.01 -1.07 -1.21 -2.78 1.61 1.09 -1.38 -0.23 0.54 -1.37 2.23 0.3 -0.09 1.08 -0.11 0.4 -0.32 0.6 -0.74 0.77 1.09 -3.78 -1.9 - -2.81 - - -1.72 -0.25
-0.57 -0.73 -1.19 -0.69 -0.21 -0.02 0.4 0.39 0.09 0.12 0.27 -0.01 1.15 0.64 -0.27 0.27 -0.06 0.55 -0.31 0.74 0.29 0.45 -0.35 -0.51 -0.58 -0.42 -0.64 -0.54 -0.57 -0.75 0.04
- - -4.21 -3.17 1.13 0.83 0.56 0.66 -0.42 -0.21 -1.53 0.02 2.52 0.14 -0.75 0.56 0.3 0.85 -4.08 -0.28 0.36 -0.73 0.0 -0.23 -0.23 -0.83 -2.72 0.15 -1.23 -1.61 -0.24
-0.68 -1.16 -0.44 -0.4 0.02 0.4 0.47 0.39 -1.28 -0.54 -0.27 -0.59 0.92 -0.03 1.0 0.26 0.73 0.66 0.02 -0.25 0.23 -0.15 1.01 -0.43 -0.39 -0.92 -0.4 -0.53 -0.93 -0.92 0.05
-1.36 -0.51 -0.85 -0.45 -0.14 0.32 0.49 0.04 -1.49 -0.61 -0.63 -0.7 1.67 -0.18 1.1 0.8 1.11 0.62 -0.53 -0.01 0.24 0.3 1.27 -1.07 -0.86 -0.83 -1.1 -1.42 -2.27 -1.9 -0.48
Bra026782 (LPP2)
 -1.97 -1.61 -1.61 -2.16 0.17 0.21 0.04 0.09 -0.13 0.38 0.34 0.04 1.21 0.92 0.8 0.73 0.79 0.22 -0.35 0.99 0.18 0.09 -0.17 -0.94 -0.7 -0.75 -0.69 -1.02 -0.96 -1.34 -0.19
Bra027220 (GRX4)
 -1.35 -0.73 -0.5 -0.89 0.81 0.95 0.1 0.67 -0.57 -0.42 -0.38 -0.67 0.86 0.86 0.74 0.26 0.22 0.75 -0.23 -0.16 0.05 -0.12 0.76 -0.53 -0.47 -1.3 -0.86 -0.47 -0.45 -1.07 -0.84
Bra027699 (GH9C2)
 -3.38 -4.69 -2.68 -3.74 -1.13 -1.29 0.32 0.3 1.29 0.67 0.06 0.49 1.36 0.95 0.26 1.17 1.07 0.08 0.2 0.45 -0.01 0.39 -1.75 -0.21 -0.22 -1.8 -0.46 -0.59 -1.07 -1.88 -1.2
Bra028367 (DHAD)
 -0.38 -0.11 -0.62 -0.3 -1.25 -0.08 0.1 0.72 -0.96 -0.01 -0.23 -0.16 1.31 -0.05 0.43 0.75 1.07 1.31 -0.15 0.33 0.54 -0.49 0.51 -0.87 -1.11 -1.1 -0.92 -1.36 -2.78 -1.53 -0.27
Bra028375 (mTERF29)
 -1.24 -0.07 -0.63 -0.94 -0.82 0.44 0.34 0.4 -0.42 0.1 -0.29 0.03 1.12 0.36 0.43 0.54 0.42 0.71 -0.4 0.39 -0.04 -0.22 0.58 -0.55 -0.89 -0.56 -0.11 -0.67 -0.84 -0.57 -0.05
Bra029266 (VND6)
 -1.01 -1.02 -0.98 - 0.19 -1.74 0.95 1.02 0.34 0.53 0.07 -0.03 1.77 0.24 -0.11 0.2 1.38 -0.31 -0.87 -0.48 -0.21 0.1 -1.65 -1.53 0.12 0.27 -0.92 -2.43 -1.21 -1.6 0.71
-2.61 -3.74 -4.42 -3.45 -0.54 -0.84 0.04 0.26 0.09 0.22 0.58 -0.11 1.75 0.62 0.53 1.36 0.48 0.25 0.1 0.67 0.98 0.63 0.05 -1.31 -1.04 -1.37 -0.84 -1.82 -1.75 -2.3 0.24
-0.03 0.1 0.22 0.08 -0.32 -0.49 0.33 0.41 -0.66 0.13 -0.53 -0.24 0.73 0.4 0.4 0.55 0.71 1.05 0.0 0.3 -0.3 0.16 0.45 -1.21 -0.5 -0.22 -0.56 -0.88 -2.31 -1.52 -0.76
-0.35 -0.53 -0.19 -0.53 -0.35 0.14 -0.02 -0.15 -0.23 0.12 -0.02 -0.12 0.84 0.41 0.83 0.4 0.26 0.4 0.1 0.19 0.32 0.47 0.14 -0.97 -0.36 -0.76 -0.31 -0.7 -0.54 -0.61 0.03
Bra030487 (UBC20)
 -0.16 -0.67 0.25 0.11 0.02 -0.26 0.23 0.02 0.01 0.13 -0.09 -0.1 1.34 -0.16 0.11 0.35 0.22 0.09 -0.04 0.37 0.06 0.05 -0.63 -0.18 -0.23 -0.34 -0.53 -0.09 -0.59 -0.55 -0.52
Bra030873 (LTPG6)
 -2.85 -2.03 -1.56 -1.46 -0.49 -0.21 0.92 -0.08 0.07 0.28 -0.41 0.13 2.28 0.87 -0.33 0.87 1.04 1.06 -0.1 0.74 0.58 -0.05 -0.18 -1.9 -1.71 -1.66 -2.06 -1.81 -2.99 -2.72 -1.67
Bra030889 (MED9)
 -0.64 -0.66 -0.59 -0.76 0.37 0.07 0.25 0.44 0.08 0.16 0.01 0.14 0.37 0.5 0.26 0.33 0.12 0.23 -0.22 0.34 0.41 0.2 0.54 -0.12 -0.39 -0.27 -0.41 -0.66 -0.63 -0.7 -0.56
-0.54 -0.73 0.12 -0.16 -1.27 0.13 0.55 0.79 -0.62 0.24 -0.12 -0.31 1.69 0.47 0.99 0.51 1.19 -0.01 -0.12 0.1 1.05 0.21 0.59 -2.42 -2.53 -2.4 -2.25 -2.14 -3.28 -3.05 -2.0
Bra031096 (RPS30A)
 -1.0 -1.03 -0.42 -0.44 -0.88 -0.44 0.01 0.81 -0.2 0.14 -0.23 -0.75 1.0 0.52 1.18 0.56 0.64 1.24 -0.28 0.56 0.47 0.52 0.99 -1.92 -1.77 -1.36 -1.36 -1.26 -1.91 -1.87 -0.8
Bra032172 (PAB4)
 -1.05 -1.14 -1.1 -0.43 -0.4 -0.17 0.39 1.01 -0.83 -0.31 -0.35 -0.56 0.93 0.21 0.31 0.93 0.88 0.8 -0.04 0.35 0.36 0.08 0.71 -0.46 -0.37 -0.57 -0.31 -0.91 -1.34 -1.3 -0.45
Bra032258 (HON5)
 -0.61 -0.63 -0.15 -0.84 0.31 0.21 -0.19 -0.28 -0.03 -0.01 -0.22 -0.12 0.51 0.15 0.56 -0.03 -0.23 0.38 -0.31 -0.16 -0.38 -0.23 0.22 0.35 0.18 -0.1 0.07 0.09 0.18 0.15 0.07
-1.38 -1.55 -0.84 -1.13 -0.76 -0.52 0.17 0.52 0.0 0.03 -0.21 -0.04 1.08 0.78 0.77 0.78 0.62 0.8 0.21 0.02 0.49 0.05 0.56 -0.74 -0.67 -0.68 -0.52 -0.78 -1.12 -1.07 -0.2
Bra035001 (NHL17)
 -1.11 -1.34 -1.17 -1.32 0.1 -0.66 -0.12 0.24 0.12 0.18 0.21 0.24 0.97 -0.02 0.39 0.49 0.32 1.03 0.46 -0.14 0.07 0.14 -0.19 0.06 -0.11 -0.28 -0.68 -0.6 -0.36 -0.18 -0.1
Bra035677 (HTB1)
 -0.92 -0.87 -0.38 -1.21 0.56 0.47 -0.01 -0.62 -0.03 -0.22 -0.07 -0.12 0.71 0.0 0.49 -0.06 -0.14 0.12 -0.11 0.0 -0.14 0.1 0.7 0.28 0.21 -0.3 0.1 0.02 0.11 -0.12 -0.51
-2.55 -1.39 -1.13 -1.48 -4.03 -0.29 0.77 1.68 -0.72 -0.26 -0.19 -0.87 1.67 1.05 0.91 1.29 1.18 1.31 -0.41 0.37 0.5 0.57 -0.74 -3.34 -3.37 -2.48 -3.33 -2.24 -4.13 -2.94 -1.92
-4.73 -3.97 -4.1 -4.04 -0.17 -0.84 1.31 1.52 0.65 0.61 0.9 0.25 2.47 -0.18 -0.84 0.63 0.41 -0.38 -0.8 0.27 0.23 0.63 -1.17 -1.47 -1.23 -2.81 -2.37 -2.33 -3.4 -2.18 -0.72
-0.89 -0.89 -1.1 -0.68 -0.2 -0.01 0.1 0.32 0.27 0.29 0.11 0.12 0.81 0.22 0.06 0.12 0.39 0.66 0.15 0.12 0.15 0.13 -0.2 -0.09 -0.11 -0.23 -0.3 -0.43 -0.32 -0.19 -0.13
Bra039302 (DOR)
 -3.0 - - - - -2.88 1.34 1.06 0.06 1.32 0.84 1.08 2.71 -1.13 0.03 1.4 0.56 -0.87 -0.65 0.31 -1.38 1.65 - -4.68 -2.9 -2.99 -4.06 - - -5.5 -2.16
- -2.75 -2.94 -1.39 0.92 -0.07 -0.24 -0.14 -0.48 -1.04 -0.17 -1.25 1.59 0.85 0.91 0.3 -0.26 0.51 0.02 -1.02 -0.86 -0.54 0.14 0.8 -0.54 -0.59 0.42 0.3 0.66 -0.57 0.35

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.