1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_201 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

 Transpose table  Download table
Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000532 (MOC1)
 4.57 4.14 3.42 4.85 9.84 10.64 9.9 11.03 6.79 8.35 9.08 9.17 18.7 12.09 13.63 11.22 12.84 9.24 9.06 10.9 9.55 9.6 11.42 5.24 5.2 3.64 5.4 5.42 3.68 3.87 5.91
28.01 46.23 30.66 42.6 65.01 64.96 138.63 206.96 42.87 63.9 62.11 56.56 426.75 144.98 180.54 196.99 155.22 142.11 47.75 76.64 101.53 84.06 111.85 21.09 19.23 19.99 20.14 22.25 10.76 14.7 34.23
Bra001694 (WOX1)
 0.0 0.01 0.03 0.0 0.1 0.05 0.4 0.72 0.14 0.42 0.32 0.57 1.47 0.02 0.02 0.58 0.5 0.68 0.53 0.53 0.43 0.55 0.38 0.0 0.04 0.0 0.01 0.05 0.0 0.01 0.01
0.02 0.06 0.23 0.11 0.27 0.38 0.5 1.01 0.26 0.39 0.53 0.46 1.21 0.89 0.33 0.68 0.69 0.7 0.73 0.67 0.36 0.78 0.06 0.09 0.0 0.0 0.0 0.05 0.03 0.03 0.07
Bra002520 (HTB4)
 40.26 43.59 54.48 49.67 81.53 66.8 73.59 72.6 63.22 73.63 73.39 74.58 223.3 80.8 86.85 93.98 93.26 146.93 71.8 73.06 84.06 86.21 71.26 26.12 28.31 20.46 24.64 22.44 20.35 17.76 20.91
Bra003210 (UBC7)
 6.07 5.77 5.49 6.05 18.08 18.52 12.83 17.67 14.68 12.3 11.6 13.46 20.89 22.76 19.47 14.12 13.2 16.45 14.64 15.1 15.92 15.36 17.31 12.92 9.35 7.7 10.02 10.54 9.95 7.4 10.74
3.94 4.88 3.55 4.22 7.39 9.55 9.63 12.87 8.89 8.51 8.4 9.28 12.19 13.17 14.83 12.01 13.23 14.21 9.12 7.5 7.93 8.61 12.18 4.22 4.61 3.1 4.81 3.66 3.83 4.38 7.14
Bra006969 (STV1)
 25.2 55.26 47.56 58.33 49.24 47.28 66.63 99.96 36.68 49.05 49.2 34.48 155.33 72.48 110.76 97.15 84.82 78.96 44.5 60.97 75.31 67.99 80.39 17.82 16.5 16.16 15.74 17.4 10.02 9.22 16.35
Bra008969 (NAA50)
 11.41 24.52 10.19 12.51 18.61 15.67 21.58 32.95 13.42 18.26 16.99 13.63 43.15 24.36 22.59 23.76 31.41 23.61 13.2 11.92 19.55 14.69 27.53 14.11 14.96 13.7 12.91 8.66 10.2 10.59 20.57
Bra009908 (SAV6)
 1.13 2.91 2.02 3.29 6.83 5.16 4.32 5.14 3.15 3.55 4.57 3.58 8.49 5.65 6.47 5.76 4.44 5.6 3.68 4.53 4.27 4.44 7.26 4.02 4.24 3.55 3.91 5.44 3.1 2.94 5.75
Bra009949 (HTA7)
 16.34 18.63 23.4 17.82 62.77 55.35 52.93 38.92 45.24 46.16 36.67 39.92 92.6 56.99 63.27 52.36 47.78 55.52 48.09 47.15 40.76 49.17 68.55 51.73 48.68 23.63 38.92 44.71 46.29 32.24 32.54
10.77 9.52 9.01 8.47 19.96 20.88 26.7 31.29 15.52 16.59 14.25 16.31 48.85 20.15 26.48 23.47 29.14 19.49 17.92 21.6 18.95 18.63 36.15 14.17 15.8 8.73 12.93 11.28 11.68 14.19 16.54
Bra010843 (IRP5)
 5.27 5.79 10.66 6.24 8.59 21.39 31.84 52.49 10.22 14.7 21.81 18.27 72.18 41.02 44.91 52.6 43.46 48.52 22.28 30.23 26.33 28.98 36.82 7.34 10.42 6.84 7.94 6.62 4.31 6.49 17.35
4.32 3.83 4.03 4.37 9.18 10.84 10.57 13.78 7.05 12.65 9.23 8.58 13.15 13.32 14.15 14.02 11.37 16.82 10.99 10.6 11.32 9.78 10.3 7.56 9.02 4.75 8.03 7.49 7.95 8.63 10.93
Bra011541 (GVS1)
 3.18 3.83 2.77 2.22 6.15 4.99 7.29 8.76 7.47 9.06 7.05 8.05 12.04 7.0 7.33 10.49 6.99 10.91 8.96 6.52 4.92 7.45 6.04 4.19 3.95 2.84 4.07 3.29 3.45 5.7 3.87
13.13 23.04 25.79 19.71 17.72 20.64 69.01 57.69 7.82 12.81 14.61 7.15 179.37 23.35 40.77 83.45 72.56 42.79 13.09 34.23 30.61 30.81 28.88 4.07 3.45 4.59 3.59 3.58 2.61 1.55 6.2
Bra011883 (CPP1)
 70.02 42.1 45.18 30.76 86.61 97.69 86.99 90.36 66.66 90.26 77.81 112.09 195.49 92.75 114.67 117.21 96.97 54.05 52.03 82.11 79.31 96.03 66.19 36.34 40.39 23.93 37.34 31.93 16.99 23.29 31.18
Bra012775 (CASPL1E1)
 0.3 0.79 1.77 3.29 2.72 3.92 5.12 9.12 3.61 3.89 3.04 2.8 19.85 8.49 8.39 8.65 8.05 16.07 2.71 3.49 3.19 4.63 1.35 0.16 0.02 0.06 0.1 0.14 0.05 0.1 0.16
16.52 19.11 19.57 25.21 15.66 18.96 24.87 33.89 12.7 21.87 17.16 22.08 35.41 21.79 27.22 38.35 37.44 42.66 23.43 28.4 24.62 21.18 19.12 16.04 16.4 16.59 18.16 14.48 10.85 13.85 22.68
Bra014713 (HSP91)
 16.75 23.63 19.24 18.7 21.57 25.17 29.44 35.22 18.89 21.68 19.16 20.55 34.9 29.35 33.67 36.69 32.26 33.44 22.89 26.96 26.11 25.49 33.85 18.5 19.79 17.46 19.42 17.05 15.2 16.35 22.91
Bra015832 (SAUR51)
 2.01 1.11 0.42 0.76 2.87 6.12 6.48 6.37 5.33 6.68 5.59 5.62 15.2 4.31 2.36 6.99 10.96 3.5 3.43 3.3 7.8 3.65 3.93 3.33 2.87 0.3 3.79 1.43 1.46 1.02 2.1
Bra016209 (PMAT2)
 0.11 0.12 0.27 0.26 0.14 0.33 1.17 1.1 0.76 1.25 1.08 1.12 2.39 1.48 1.12 1.36 1.04 1.29 0.72 1.15 1.03 0.97 0.6 0.5 0.29 0.47 0.64 0.35 0.54 0.61 0.74
Bra016702 (WHY1)
 21.26 18.65 17.22 34.99 26.77 28.54 29.84 40.51 17.49 24.62 17.76 26.3 67.51 27.59 33.74 36.65 45.18 55.4 33.19 32.83 30.85 27.81 49.98 21.09 21.7 19.71 20.04 18.48 14.41 15.95 27.93
Bra018301 (H1.2)
 24.16 35.54 60.18 25.48 116.52 159.88 158.83 146.94 130.89 135.01 132.34 123.71 212.81 145.03 167.62 144.26 142.46 222.38 132.12 154.72 120.39 144.97 156.69 106.21 91.22 55.47 87.23 68.23 92.39 83.1 96.11
12.11 20.97 24.5 28.12 11.59 20.18 43.81 85.43 17.39 33.36 26.35 25.05 100.48 44.7 41.05 52.79 60.69 52.76 18.68 39.86 36.76 38.31 50.26 15.06 16.86 19.09 19.08 10.95 6.9 10.41 19.68
35.07 55.32 32.62 67.44 23.95 42.26 74.53 118.46 24.55 43.25 41.55 31.76 185.49 93.92 88.7 61.83 82.53 101.36 30.23 61.09 53.05 46.0 129.56 22.6 26.79 26.17 23.95 21.52 11.81 11.88 28.98
Bra021654 (H1.2)
 21.32 26.19 48.67 28.26 105.22 168.43 122.72 101.84 150.89 136.75 130.4 104.25 188.6 157.39 129.63 149.5 140.04 157.35 105.63 153.23 105.58 119.83 169.15 121.0 99.32 48.74 83.34 70.87 99.44 74.09 97.48
Bra022156 (FPS1)
 20.01 18.8 21.57 18.62 21.64 20.94 30.61 35.37 37.46 32.73 33.49 31.85 46.67 39.27 26.64 35.9 32.27 26.59 26.31 28.48 31.81 30.61 22.12 26.5 23.41 26.83 23.55 32.32 31.57 23.87 25.07
Bra023417 (HPAT3)
 23.63 26.88 29.79 32.27 40.69 37.19 43.51 48.93 25.75 35.8 30.2 31.58 55.27 40.73 51.31 50.55 46.71 45.03 31.96 35.53 35.64 36.48 48.65 21.04 21.07 22.81 21.5 18.01 15.67 18.24 19.72
Bra024028 (ABAPT8)
 0.05 0.13 0.17 0.08 0.07 0.02 0.52 0.36 0.07 0.14 0.25 0.07 0.8 0.21 0.16 0.36 0.16 0.22 0.14 0.26 0.1 0.29 0.36 0.01 0.05 0.0 0.02 0.0 0.0 0.05 0.14
11.34 10.16 7.37 10.41 14.59 16.6 22.28 22.11 17.96 18.28 20.32 16.68 37.25 26.29 13.98 20.33 16.1 24.74 13.61 28.13 20.58 23.06 13.21 11.81 11.24 12.6 10.82 11.61 11.35 10.03 17.32
0.0 0.0 0.02 0.03 0.67 0.54 0.45 0.48 0.23 0.26 0.11 0.31 1.75 0.34 0.18 0.45 0.38 0.55 0.02 0.25 0.39 0.18 0.31 0.26 0.26 0.17 0.05 0.34 0.13 0.1 0.26
12.47 8.92 14.66 15.13 20.18 26.27 27.72 26.2 8.2 13.71 16.5 13.26 37.66 19.58 39.85 23.83 33.0 31.5 20.29 16.8 23.46 17.98 40.21 14.82 15.18 10.52 15.1 13.77 10.49 10.51 20.67
21.69 39.2 30.82 40.89 50.66 69.39 78.13 57.15 19.86 36.54 35.86 34.3 177.2 49.12 119.17 96.61 119.85 85.41 38.48 55.09 65.74 68.51 134.07 26.6 30.75 31.32 25.98 20.8 11.51 14.94 39.87
Bra026782 (LPP2)
 0.77 0.98 0.98 0.67 3.37 3.47 3.09 3.2 2.74 3.92 3.81 3.08 6.92 5.7 5.23 4.98 5.19 3.51 2.36 5.96 3.39 3.19 2.67 1.56 1.84 1.79 1.86 1.48 1.54 1.19 2.64
Bra027220 (GRX4)
 3.3 5.06 5.92 4.53 14.72 16.17 8.97 13.37 5.65 6.29 6.43 5.29 15.2 15.23 14.0 10.05 9.76 14.13 7.17 7.51 8.71 7.7 14.19 5.81 6.06 3.42 4.62 6.07 6.14 4.0 4.68
Bra027699 (GH9C2)
 0.89 0.36 1.45 0.69 4.25 3.8 11.58 11.44 22.73 14.72 9.66 13.04 23.74 17.94 11.09 20.92 19.51 9.8 10.65 12.66 9.24 12.17 2.76 8.02 7.97 2.66 6.77 6.18 4.43 2.52 4.03
Bra028367 (DHAD)
 3.47 4.18 2.93 3.66 1.89 4.25 4.83 7.43 2.32 4.48 3.85 4.04 11.14 4.35 6.07 7.59 9.43 11.14 4.07 5.65 6.56 3.22 6.4 2.47 2.08 2.1 2.39 1.75 0.66 1.56 3.73
Bra028375 (mTERF29)
 0.81 1.83 1.24 1.0 1.09 2.61 2.44 2.53 1.43 2.06 1.58 1.96 4.18 2.46 2.59 2.79 2.58 3.15 1.46 2.52 1.87 1.65 2.87 1.31 1.04 1.3 1.78 1.21 1.08 1.29 1.86
Bra029266 (VND6)
 0.06 0.06 0.06 0.0 0.14 0.04 0.23 0.25 0.15 0.18 0.13 0.12 0.42 0.14 0.11 0.14 0.32 0.1 0.07 0.09 0.11 0.13 0.04 0.04 0.13 0.15 0.06 0.02 0.05 0.04 0.2
0.24 0.11 0.07 0.13 1.0 0.82 1.5 1.75 1.55 1.71 2.18 1.35 4.92 2.25 2.11 3.76 2.05 1.74 1.56 2.33 2.88 2.26 1.51 0.59 0.71 0.57 0.82 0.41 0.43 0.3 1.73
49.92 54.72 59.47 54.11 40.74 36.29 64.29 67.83 32.31 55.83 35.25 43.15 84.88 67.41 67.19 74.86 83.52 105.32 51.14 62.81 41.42 56.82 69.83 22.02 36.16 43.93 34.52 27.69 10.26 17.79 30.13
41.51 36.79 46.46 36.73 41.72 58.25 52.29 47.81 45.14 57.42 52.23 48.62 94.91 70.29 94.47 69.77 63.39 69.89 56.78 60.49 66.16 73.64 58.38 27.1 41.22 31.35 42.77 32.56 36.34 34.66 53.99
Bra030487 (UBC20)
 14.17 9.96 18.76 17.07 16.01 13.18 18.55 16.05 15.92 17.34 14.86 14.72 39.92 14.16 17.01 20.13 18.4 16.83 15.32 20.41 16.43 16.4 10.19 13.97 13.43 12.46 10.96 14.87 10.52 10.77 11.0
Bra030873 (LTPG6)
 1.86 3.28 4.55 4.87 9.53 11.61 25.48 12.67 14.14 16.28 10.11 14.69 65.31 24.51 10.7 24.49 27.63 27.97 12.55 22.35 20.02 12.93 11.83 3.61 4.1 4.24 3.21 3.83 1.69 2.04 4.22
Bra030889 (MED9)
 10.55 10.45 10.92 9.71 21.26 17.23 19.63 22.3 17.39 18.36 16.63 18.19 21.29 23.21 19.65 20.7 17.89 19.35 14.12 20.81 21.83 18.85 23.86 15.13 12.59 13.65 12.39 10.4 10.63 10.13 11.14
12.95 11.38 20.48 16.9 7.83 20.58 27.58 32.62 12.24 22.18 17.28 15.18 60.55 26.09 37.3 26.84 42.93 18.76 17.37 20.16 38.89 21.84 28.33 3.52 3.25 3.56 3.96 4.27 1.94 2.27 4.7
Bra031096 (RPS30A)
 64.18 62.73 95.95 94.71 69.52 94.58 128.96 223.86 111.49 141.58 108.8 76.1 255.44 183.91 290.02 188.83 199.59 302.24 105.33 189.27 177.68 184.0 253.66 33.84 37.52 49.98 49.91 53.48 33.96 35.03 73.3
Bra032172 (PAB4)
 9.15 8.58 8.84 14.05 14.36 16.92 24.94 38.26 10.7 15.33 14.87 12.84 36.12 21.88 23.48 36.06 35.0 33.01 18.45 24.24 24.32 20.02 30.96 13.84 14.71 12.78 15.3 10.12 7.48 7.7 13.93
Bra032258 (HON5)
 5.97 5.91 8.23 5.1 11.28 10.52 7.98 7.52 8.96 9.08 7.83 8.4 12.96 10.12 13.49 8.94 7.79 11.9 7.38 8.14 7.03 7.77 10.65 11.6 10.33 8.52 9.61 9.73 10.37 10.15 9.57
6.46 5.73 9.37 7.69 9.92 11.7 18.92 24.14 16.82 17.09 14.51 16.36 35.55 28.85 28.55 28.81 25.86 29.18 19.48 16.98 23.64 17.37 24.81 10.03 10.55 10.46 11.7 9.78 7.73 7.98 14.62
Bra035001 (NHL17)
 2.96 2.53 2.84 2.56 6.86 4.06 5.92 7.59 6.95 7.25 7.42 7.56 12.55 6.32 8.38 9.02 7.98 13.13 8.79 5.82 6.72 7.05 5.61 6.68 5.92 5.29 4.0 4.23 5.0 5.67 5.99
Bra035677 (HTB1)
 86.97 89.71 126.57 71.06 242.88 228.22 163.25 106.72 160.86 141.35 156.26 151.09 267.93 164.75 230.45 157.66 148.72 179.03 152.08 164.71 149.07 176.18 266.44 199.39 190.63 133.09 176.58 166.44 177.16 150.87 115.71
0.97 2.18 2.61 2.05 0.35 4.67 9.71 18.3 3.45 4.76 5.0 3.12 18.09 11.81 10.71 13.95 12.9 14.11 4.3 7.39 8.05 8.46 3.43 0.56 0.55 1.02 0.57 1.21 0.33 0.74 1.51
0.05 0.09 0.08 0.09 1.28 0.81 3.58 4.15 2.26 2.2 2.7 1.72 7.99 1.27 0.81 2.24 1.91 1.11 0.83 1.73 1.7 2.23 0.64 0.52 0.62 0.21 0.28 0.29 0.14 0.32 0.88
7.49 7.5 6.48 8.68 12.12 13.78 14.91 17.35 16.75 17.01 15.01 15.12 24.34 16.2 14.52 15.11 18.3 21.99 15.4 15.13 15.39 15.28 12.11 13.07 12.9 11.84 11.29 10.33 11.18 12.2 12.69
Bra039302 (DOR)
 0.05 0.0 0.0 0.0 0.0 0.06 1.03 0.85 0.43 1.02 0.73 0.86 2.68 0.19 0.42 1.08 0.61 0.22 0.26 0.51 0.16 1.28 0.0 0.02 0.05 0.05 0.02 0.0 0.0 0.01 0.09
0.0 0.1 0.09 0.27 1.32 0.66 0.59 0.63 0.5 0.34 0.62 0.29 2.11 1.26 1.31 0.86 0.58 0.99 0.7 0.34 0.38 0.48 0.77 1.22 0.48 0.46 0.93 0.86 1.1 0.47 0.89

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)