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Heatmap: Cluster_265 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

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(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000090 (AtANN4)
 1.79 0.56 2.45 1.78 11.6 6.94 30.95 27.86 15.87 24.92 22.15 16.39 46.64 8.59 5.26 22.43 26.27 32.56 9.2 12.08 13.35 16.74 21.96 19.14 21.39 20.67 16.49 11.83 16.59 14.91 29.16
Bra000091 (ANN3)
 1.74 0.89 1.62 2.73 4.16 2.29 5.48 4.52 3.56 4.6 4.34 3.36 7.92 2.6 1.45 3.95 3.99 5.3 1.58 2.32 2.42 2.67 3.71 4.7 4.89 4.88 4.82 3.2 5.64 4.54 6.49
Bra000942 (GT72B1)
 2.01 0.95 1.36 1.4 2.62 3.98 6.39 6.63 4.1 5.31 4.93 4.05 8.4 2.53 3.78 9.14 6.52 5.03 3.12 5.92 4.91 5.51 3.63 4.47 5.25 2.53 5.39 3.0 3.57 3.81 9.98
1.76 1.23 1.56 1.73 10.73 14.95 17.99 15.02 9.6 10.81 9.69 9.49 16.86 18.03 17.05 19.99 18.09 22.76 14.88 14.16 11.75 12.19 5.26 14.35 15.54 11.86 14.04 11.54 10.55 10.95 18.72
0.0 0.07 0.02 0.05 0.04 0.0 0.14 0.08 0.11 0.11 0.24 0.34 0.5 0.05 0.07 0.12 0.11 0.48 0.17 0.05 0.19 0.06 0.04 0.04 0.04 0.02 0.0 0.0 0.09 0.01 0.1
0.0 0.0 0.0 0.0 0.18 0.0 2.09 2.5 0.63 1.74 2.16 1.68 11.32 1.08 0.82 2.97 0.88 4.01 2.62 2.0 4.39 1.57 9.49 5.53 3.08 2.36 5.1 0.3 1.28 2.25 2.33
0.0 0.0 0.06 0.07 0.22 0.13 0.28 0.06 0.15 0.26 0.18 0.11 1.74 0.46 0.13 0.1 0.31 0.73 0.15 0.17 0.34 0.19 1.45 1.06 0.63 0.53 0.69 0.54 0.63 0.62 0.76
7.42 3.58 1.78 3.66 5.87 8.6 22.06 19.22 16.3 17.74 15.35 17.74 21.85 7.69 7.69 16.76 17.35 15.12 9.8 16.62 12.29 15.41 8.11 20.28 19.39 19.43 16.96 13.03 12.79 14.76 23.96
Bra003397 (MTHFR1)
 50.67 52.06 47.16 54.64 62.44 60.87 75.67 68.78 46.13 56.83 42.79 43.16 75.5 61.56 64.14 75.7 67.1 62.16 50.5 60.73 55.05 53.7 51.58 64.56 65.64 58.66 58.29 63.18 55.69 37.26 43.2
Bra004319 (XYL1)
 1.93 1.43 1.98 0.68 3.12 2.81 3.86 3.82 2.1 5.41 4.01 2.69 7.4 4.03 3.77 8.78 8.95 10.89 3.21 2.99 4.4 3.82 7.3 5.92 6.69 4.98 7.2 3.66 2.8 5.2 10.23
Bra004945 (GEF4)
 0.23 0.09 0.06 0.15 0.36 2.27 1.93 5.28 3.36 4.59 0.31 1.57 8.42 1.48 1.97 6.85 3.96 3.26 2.57 3.68 4.11 2.6 0.72 8.28 7.54 5.61 7.78 6.12 7.39 5.59 17.85
Bra005238 (XTH32)
 3.74 2.54 1.05 1.41 6.21 4.27 15.62 34.32 12.95 12.58 11.67 14.18 56.83 13.76 12.53 15.18 18.82 30.76 13.96 10.29 12.4 11.16 29.06 24.59 26.46 12.23 26.15 17.56 11.75 20.32 40.6
Bra006942 (CAH1)
 32.59 25.62 17.62 9.32 36.09 77.59 136.24 111.79 78.73 74.03 92.19 95.28 137.6 86.3 85.3 118.24 111.24 184.84 122.33 118.17 96.12 104.83 30.18 147.17 147.15 112.01 133.46 68.92 98.45 78.71 159.75
Bra007609 (PGF9)
 8.22 6.28 3.89 3.66 4.61 7.0 19.78 14.59 9.37 9.03 12.6 12.14 18.21 5.87 7.87 11.43 10.22 18.4 13.68 10.4 7.98 8.25 11.51 19.06 18.06 11.36 14.76 9.96 8.97 9.43 19.81
Bra009052 (AST68)
 3.86 3.09 2.26 3.02 2.47 8.54 22.65 25.57 8.45 11.24 8.81 12.44 20.51 6.42 9.99 20.3 17.64 22.49 12.93 20.9 13.15 13.95 2.62 13.88 17.09 9.48 15.92 7.12 8.7 7.31 27.64
Bra009396 (PPa6)
 57.01 56.74 58.72 107.34 51.36 67.2 194.0 221.07 73.59 146.2 119.4 114.36 263.88 84.07 51.79 178.36 219.71 183.23 139.9 216.48 173.63 118.82 86.74 176.2 184.21 176.33 172.76 109.67 72.0 77.36 141.53
Bra009536 (ADK2)
 30.25 27.87 28.99 47.24 52.05 41.41 80.01 54.6 25.3 34.09 36.32 25.65 62.77 37.47 34.58 50.86 58.13 56.05 36.32 30.54 33.15 32.25 48.03 37.98 40.33 36.13 40.15 28.93 19.85 21.33 28.16
3.73 2.94 5.01 3.31 4.99 4.38 7.24 7.71 4.68 5.98 5.25 4.5 6.66 3.84 3.42 9.01 10.4 4.08 4.05 6.24 5.26 4.95 2.74 8.06 8.35 7.29 7.82 7.06 6.65 5.44 9.84
Bra011132 (PAO5)
 3.36 1.98 2.76 3.85 5.39 5.81 8.47 7.86 4.37 4.92 4.89 4.38 12.64 7.57 6.28 8.72 8.19 10.27 5.72 7.06 7.17 4.77 7.01 7.0 7.81 8.91 6.65 6.93 6.61 5.46 8.35
Bra011235 (FADC)
 15.87 10.05 15.07 20.66 18.33 21.68 27.81 38.41 25.28 25.67 27.93 24.62 53.69 24.13 18.1 38.02 31.55 29.18 24.5 32.06 25.8 24.7 18.89 31.16 32.02 28.39 29.97 31.97 30.0 26.26 42.41
Bra011971 (CSD2)
 2.41 2.88 3.38 3.95 0.5 1.39 10.77 19.72 6.84 13.92 9.5 11.14 26.65 1.85 2.17 14.62 11.44 2.36 5.9 14.18 9.19 9.55 12.02 12.87 13.72 15.5 13.9 9.07 5.72 6.35 11.01
Bra012052 (NPF6.2)
 26.8 26.15 30.86 26.17 25.56 47.73 82.37 57.93 55.58 62.13 68.28 66.51 72.15 40.71 35.88 82.24 72.68 55.98 56.41 84.79 71.97 69.34 65.56 78.81 87.86 62.39 74.83 41.58 50.45 51.64 97.75
0.15 0.18 0.13 0.26 0.36 0.22 1.21 1.04 0.66 0.52 0.61 0.26 1.97 0.5 0.43 0.97 0.6 1.17 0.76 0.38 0.5 0.49 1.36 0.58 0.76 0.56 0.42 0.65 0.39 0.35 0.63
1.77 2.77 2.53 3.52 1.47 2.18 7.98 6.64 5.43 4.32 6.27 3.82 12.06 3.4 1.74 6.0 3.56 4.53 3.84 4.34 4.4 4.44 4.9 4.22 5.22 4.85 3.42 2.94 3.33 1.99 5.13
0.24 0.1 0.17 0.15 0.5 0.38 0.43 0.36 0.41 0.5 0.32 0.47 0.87 0.85 0.49 0.6 0.75 0.42 0.34 0.66 0.43 0.53 0.4 0.81 0.87 0.76 0.97 0.75 0.84 0.87 1.62
4.35 3.14 3.54 6.04 5.13 5.62 9.69 9.58 3.89 5.56 5.74 4.85 15.06 8.19 6.49 11.13 12.59 8.5 5.67 7.23 6.95 7.32 6.31 7.07 8.54 9.75 7.58 5.38 4.78 4.02 7.38
Bra014831 (F3H)
 0.05 0.03 0.04 0.03 0.06 0.07 1.43 2.1 0.23 0.39 0.15 0.28 2.77 0.0 0.12 0.18 0.15 2.3 0.14 0.08 0.12 0.1 0.53 0.25 0.6 0.31 0.39 0.26 0.69 0.65 1.84
Bra015404 (PER3)
 2.93 1.73 1.31 4.82 8.5 6.62 21.17 19.91 21.87 29.91 25.01 31.01 37.01 12.8 7.82 27.79 36.18 28.62 19.13 28.98 24.49 23.44 11.71 21.26 22.2 38.19 25.37 13.38 16.03 27.77 36.71
2.44 3.48 4.04 4.41 0.86 1.26 6.54 4.89 2.78 3.67 4.19 3.27 7.44 1.64 2.94 6.32 7.34 12.74 4.34 5.12 3.72 4.26 5.92 5.67 5.86 5.55 4.94 2.45 2.51 1.75 3.29
Bra015788 (PETE1)
 1026.11 1206.47 1344.76 1441.98 829.71 1381.72 2893.71 2610.8 1610.67 2771.48 2212.49 2669.4 2570.5 870.71 798.26 2207.23 2846.82 1573.46 1549.45 2486.97 3071.58 2873.93 1652.97 1735.38 1836.62 1752.92 2090.54 1067.85 1075.92 2102.88 2210.85
Bra016223 (CA4)
 82.48 97.94 71.98 93.27 59.82 85.7 172.1 170.28 107.0 140.08 155.07 130.79 220.1 109.4 114.38 179.54 176.45 111.93 131.96 168.23 147.42 134.03 65.4 138.8 145.5 155.02 147.16 134.98 125.09 99.24 157.72
4.31 7.35 6.24 9.48 5.62 4.01 13.04 35.0 8.08 17.5 13.09 11.0 42.52 6.82 7.9 20.16 16.31 22.85 10.19 16.12 14.96 9.68 20.87 17.21 17.88 18.18 18.75 10.27 7.55 13.85 18.04
Bra016614 (CASPL2A1)
 1.61 1.45 1.77 2.21 3.27 3.12 5.42 3.9 4.61 5.14 6.17 5.29 11.79 2.62 2.82 6.82 4.87 6.75 3.05 4.6 5.36 5.43 3.98 5.48 4.67 4.32 6.04 4.05 5.07 3.57 5.92
Bra017017 (JAL22)
 0.0 0.01 0.02 0.08 0.01 1.54 4.13 10.27 2.31 2.08 2.4 2.8 14.98 1.16 0.84 2.46 5.91 12.58 1.97 1.53 4.1 2.46 0.76 0.01 0.05 0.0 0.03 0.01 0.01 0.09 1.27
Bra017083 (JAL22)
 0.02 0.24 0.45 0.65 0.06 0.54 1.91 3.49 0.64 1.6 1.12 0.95 4.0 0.48 0.42 1.26 1.77 4.45 0.6 0.51 2.11 0.99 0.22 1.11 1.31 1.18 1.41 0.3 0.63 1.16 3.54
Bra017222 (TIP1;1)
 151.44 140.11 172.47 316.01 142.76 220.99 845.44 925.61 418.88 699.15 760.52 603.61 938.79 245.1 182.05 766.37 838.99 335.68 263.33 601.82 627.55 560.91 210.03 438.2 479.14 479.18 443.62 169.27 185.97 258.88 569.41
Bra017666 (BLH6)
 6.86 4.55 5.5 8.21 8.78 10.8 17.4 16.31 14.0 14.5 10.13 11.17 18.95 9.87 9.41 18.4 18.39 13.14 12.52 17.44 14.29 15.38 6.51 15.26 15.72 16.53 14.36 14.05 14.45 10.03 11.34
Bra020115 (GER3)
 0.36 0.03 0.03 0.04 0.67 1.42 6.96 6.68 1.27 3.68 2.87 3.71 20.85 0.15 0.38 1.88 5.72 9.02 3.81 2.45 4.14 1.78 15.35 4.78 6.87 4.08 4.52 4.89 3.5 4.67 11.61
0.87 0.28 0.57 0.96 0.94 1.24 1.77 1.8 0.9 1.51 1.6 1.03 1.86 1.42 1.65 2.03 1.57 1.85 1.27 1.95 1.6 1.64 1.26 1.54 1.88 1.29 1.48 1.52 1.45 0.88 1.93
Bra024992 (MYC5)
 3.1 1.81 0.83 2.07 4.19 9.5 13.34 13.98 10.25 6.72 6.1 10.6 18.29 9.96 7.78 9.84 6.62 17.01 10.47 6.35 6.88 7.13 3.33 6.73 6.43 2.81 6.04 8.33 7.84 7.57 11.76
Bra025601 (SCPL13)
 3.83 4.02 4.15 7.91 4.3 2.36 14.43 9.9 6.47 11.3 7.88 8.67 18.98 1.02 1.04 16.59 15.25 18.82 8.93 12.46 10.02 11.42 8.57 9.79 9.74 10.19 10.34 4.63 4.46 10.14 19.8
4.88 4.41 6.93 7.82 3.15 3.5 19.66 17.78 10.8 15.35 17.66 15.84 22.73 4.66 3.59 17.64 21.29 5.78 7.33 17.9 14.72 15.61 14.44 12.15 11.92 9.67 12.39 6.61 8.96 8.08 17.63
0.19 0.21 0.32 0.24 0.44 0.63 0.56 0.73 0.37 0.4 0.36 0.25 0.68 0.4 0.49 0.72 0.8 0.84 0.34 0.5 0.52 0.39 0.5 1.13 0.73 0.72 0.83 0.72 0.77 0.66 1.18
Bra028191 (TSBtype2)
 0.29 0.49 0.28 0.44 1.04 1.4 3.14 4.24 2.39 3.77 3.71 3.61 9.79 2.85 2.23 3.76 3.33 6.13 2.94 2.06 2.25 2.6 7.94 2.99 3.39 3.41 4.22 2.71 2.04 2.98 4.05
2.88 2.85 2.7 3.19 2.07 2.27 6.36 6.64 1.98 3.77 2.45 2.62 5.29 1.2 0.6 5.0 5.98 5.44 3.5 4.31 3.19 4.77 3.61 3.59 5.4 2.83 5.68 1.83 1.71 4.15 8.09
Bra029515 (IF1)
 4.2 3.08 1.09 3.05 4.72 8.25 11.83 16.7 10.91 7.27 12.14 7.98 15.14 13.19 9.94 10.38 6.99 24.45 10.16 9.35 8.27 6.73 6.4 10.25 10.29 9.61 9.42 8.9 8.94 7.6 11.64
Bra030459 (bHLH115)
 8.89 13.74 13.56 9.27 6.94 10.26 39.4 34.21 21.2 25.45 26.03 28.74 52.61 10.62 15.03 42.95 31.45 70.29 41.51 43.4 29.61 43.0 25.2 37.25 39.17 29.2 29.95 25.39 20.6 19.03 36.23
Bra031496 (ABC4)
 8.45 8.78 7.43 8.86 9.91 7.18 14.3 16.96 9.32 13.22 12.74 12.88 21.07 5.94 5.74 14.17 12.81 7.45 6.98 10.85 12.14 9.11 7.11 9.6 10.67 8.91 10.04 7.41 6.92 8.92 15.21
0.83 1.33 1.74 1.94 2.77 2.17 2.5 3.58 1.71 2.57 2.4 2.2 6.01 1.87 2.5 5.32 5.13 2.87 2.46 3.46 2.44 3.03 2.88 3.52 3.86 3.91 3.92 3.84 4.83 3.03 6.64
Bra034205 (DFL2)
 6.93 2.3 2.98 4.95 18.76 22.17 27.77 36.4 19.14 17.9 18.1 21.12 33.24 23.28 24.69 31.62 25.76 48.52 28.93 18.13 22.75 19.43 11.14 25.44 24.15 18.67 25.12 21.49 25.85 23.74 39.22
Bra034242 (ORF02)
 22.66 20.82 22.68 34.21 22.36 39.5 57.78 62.83 38.69 50.5 48.45 43.82 75.09 40.33 41.54 77.46 67.7 44.92 44.39 60.85 57.13 62.43 45.67 63.64 67.7 55.44 63.8 38.99 43.99 38.75 55.51
Bra034629 (CAP1)
 4.23 4.61 4.74 5.96 7.45 6.52 10.04 9.01 5.85 9.19 6.92 7.42 14.16 8.42 7.95 13.58 11.54 9.05 8.07 8.88 6.7 8.91 8.06 8.97 9.6 9.73 10.11 6.89 7.06 8.91 10.71
Bra035201 (DJA7)
 26.49 27.36 21.92 28.79 20.66 21.67 44.61 44.36 31.64 39.88 36.36 35.18 47.26 29.16 27.98 37.7 39.76 25.15 27.44 33.83 28.11 38.5 19.89 38.22 40.41 41.48 44.78 34.5 32.33 36.08 57.52
Bra036812 (IQD20)
 0.0 0.0 0.5 0.85 0.34 0.18 2.7 1.96 0.97 2.66 1.97 0.99 5.95 0.95 0.51 3.96 2.61 1.68 1.16 2.64 2.15 1.96 2.74 1.27 1.67 2.19 0.43 0.68 0.26 0.78 1.23
Bra036946 (ILL6)
 5.74 6.69 8.86 13.43 4.25 7.66 20.8 26.44 9.51 16.54 17.86 16.93 26.64 5.56 3.96 21.46 24.79 10.03 6.63 15.78 19.9 15.96 14.21 12.48 18.03 14.31 19.94 8.07 10.58 9.43 26.34
Bra037005 (PGF14)
 0.67 0.28 0.53 0.72 0.94 1.17 3.18 2.74 0.49 1.83 1.51 0.79 5.15 0.89 0.45 2.52 2.6 2.59 0.79 3.41 2.17 1.6 1.45 2.93 3.02 1.52 3.14 2.08 2.53 2.37 3.2
Bra037244 (AtCAP2)
 0.0 0.64 0.3 0.33 0.25 0.11 4.39 8.0 1.49 5.23 3.97 2.02 12.66 0.0 1.18 7.43 10.72 2.11 1.05 6.92 3.44 7.3 1.72 1.75 0.85 0.0 2.52 0.48 0.48 0.79 2.04
0.58 0.48 0.41 0.98 0.65 0.92 1.66 2.12 0.73 1.05 0.7 0.65 2.03 1.05 0.74 1.77 1.48 1.19 0.97 1.21 0.97 0.81 1.3 1.22 1.41 1.0 1.41 1.02 0.89 1.12 1.37
0.22 0.18 1.05 0.99 0.09 0.39 10.24 4.62 2.97 4.73 9.32 2.9 21.85 0.73 0.03 12.64 11.13 6.18 1.42 4.53 6.92 5.68 10.0 6.62 4.69 3.33 4.91 3.55 2.07 2.57 8.62
Bra039274 (LAC6)
 0.33 0.29 0.16 0.41 0.22 0.31 0.38 0.8 0.46 0.52 0.49 0.24 1.17 0.29 0.48 0.79 0.44 0.68 0.44 0.44 0.34 0.46 0.15 0.44 0.33 0.35 0.51 0.27 0.17 0.25 0.18
Bra039290 (LCBK2)
 2.92 3.39 3.64 4.21 2.92 3.09 4.4 4.9 3.31 3.81 3.86 2.97 5.5 3.22 2.96 4.72 4.24 3.23 2.3 3.62 4.02 3.43 3.75 4.15 4.63 4.34 4.68 4.63 4.33 5.13 6.58
Bra039409 (AIF1)
 0.89 0.5 0.43 1.12 5.98 7.78 8.59 4.47 4.28 8.61 4.89 4.27 16.11 14.0 8.35 14.28 9.87 11.57 5.67 9.14 12.85 7.7 10.57 7.87 11.24 10.81 9.15 7.36 9.12 8.53 14.7
Bra039888 (ESV1)
 11.06 13.25 15.63 12.88 12.77 11.96 16.9 20.18 9.6 12.04 12.02 12.12 19.69 12.98 12.17 18.53 18.06 12.5 10.61 13.67 11.37 11.92 11.14 15.44 16.45 15.52 15.92 16.05 15.81 15.98 20.13
Bra040225 (MEE32)
 3.59 3.76 4.58 7.58 6.92 6.83 9.69 9.36 5.29 6.42 5.19 3.98 11.17 4.69 5.72 7.54 9.03 8.34 5.9 5.32 6.4 5.64 6.35 7.59 7.76 6.61 8.84 5.97 5.2 6.4 10.33

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)