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Heatmap: Cluster_239 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
3.51 2.0 - - - - - - - - - 1.95 - - - - - - - - - - 3.55 - - - - - - - -
Bra000696 (STK)
 - - - - -1.36 - -1.66 - - 0.73 0.02 -1.48 -1.27 - - 1.9 0.6 0.41 0.08 - 0.4 - -0.47 -1.51 - 2.48 0.91 - 0.93 0.95 2.47
- - 0.6 -0.28 1.72 1.73 - - 0.3 - - 1.38 1.79 1.16 - -0.35 - - - 1.12 -0.49 -0.48 2.01 - - 2.03 - - - - -
- - - - 2.86 - - - - - - - 1.53 - - - - - - - - - 2.25 - - 3.24 - - 2.21 1.06 -
0.27 - 1.35 1.35 1.11 1.58 -0.16 - - - - - 0.2 - - 0.19 0.07 - - - - - - - - 2.92 - 1.79 1.66 0.12 -
- - - - - - - - - - - - 3.05 - - - - 1.81 - - - - 1.95 - - 2.89 1.86 2.1 - - -
Bra002988 (MEE4)
 - - - - - 1.57 - - - - - - - - - - - - - - - - 1.6 - - 4.22 - - - - 2.66
- - - - - - - - - - - - - - - - - - - - - - 3.54 - - 3.32 1.7 0.91 - - 2.09
-0.06 -0.41 -0.7 -0.08 -1.47 -0.92 -1.12 -0.77 -0.76 -1.54 -0.69 -1.37 -0.48 -0.67 -2.02 -1.01 -2.06 0.81 -0.84 -0.87 -2.15 -1.66 1.32 0.68 1.25 2.05 1.02 0.46 0.58 0.91 -0.4
- - - - 1.11 1.1 -0.61 -1.33 - - -1.45 - 0.46 1.27 1.48 2.04 -0.29 0.26 -0.21 0.31 - 0.85 0.16 - 1.06 1.53 - -0.49 - -1.53 0.59
Bra008268 (CML39)
 - - - 0.64 1.27 - - - - 2.36 - - - - - - - - - - - - 2.38 - - 3.33 - - - - 2.73
Bra011080 (LecRK-V.9)
 - 3.04 - - 2.51 - - - - - - - - - 2.84 - - - - - - - 1.62 - - - - 2.77 - - -
Bra011806 (AGP3)
 - 0.81 - -0.71 0.67 - -1.28 - 1.66 - - - 1.88 - - - - 2.96 - - - - 1.82 - 1.05 2.26 -0.84 0.08 - - -
Bra013781 (KOR3)
 - -0.68 - - -0.69 - -1.99 0.48 -2.92 - - -0.05 - -2.41 - - -0.08 -0.12 -1.83 -2.65 -2.68 -1.81 1.82 0.84 2.13 2.31 1.72 1.01 0.5 0.2 0.63
- 2.77 - - - - - 2.29 - - - - 1.46 - - - - - - - - - - - - 2.32 - 3.1 - - 1.57
Bra014398 (PRP3)
 - - - 0.72 - - - - - - - - 2.13 - - - - 1.84 - - - - 2.94 - - 3.78 - - - - -
Bra014758 (RPL23A2)
 - 0.08 - - -0.33 - -0.44 0.45 -1.03 -1.87 -0.41 -0.23 1.51 - 0.99 -1.58 0.8 0.65 -1.71 -0.78 -1.94 1.56 1.99 - 0.74 0.72 - 1.11 -0.73 -0.82 0.57
- -1.85 0.38 -1.87 0.17 0.57 -0.27 -1.05 0.75 -1.12 -0.8 0.75 - -0.75 1.32 -0.71 0.04 0.61 1.13 -0.43 0.21 -0.61 0.19 0.81 - 1.16 0.48 -0.46 -0.51 -1.15 0.51
- - - - - -1.25 - - 0.64 1.11 - - 0.05 0.14 1.24 -0.95 - 1.85 -1.42 -1.12 - - 2.64 -0.19 0.11 3.05 - - -0.03 - -
Bra016930 (PRX25)
 - -1.76 - -2.93 -0.18 -0.67 -1.18 -0.32 -3.33 -1.86 -0.88 -3.5 2.03 0.14 -0.96 -1.27 -0.57 1.94 -3.39 -0.75 -3.22 -2.62 2.33 -0.25 -4.12 2.46 -0.21 0.22 -1.38 -1.2 -0.04
3.15 2.64 1.53 - 1.41 - - - - - - - - - - - - - - - - - 2.93 - - - - 1.44 - - -
Bra017777 (NCH1)
 - - - - 1.19 0.08 0.94 - - - - - - - 1.69 - - - - 3.25 - - - - - 3.57 - - - - 0.2
- - 2.46 - - - - - - - - - - - - - - - - - - - - - - 3.61 - - 3.73 - -
- - - - - - - - - - - 3.35 - - - - - - - - - - 3.41 - - 3.35 - - - - -
0.32 0.38 - -0.07 - - - - -0.21 1.55 - - 2.49 1.18 - 2.52 0.07 0.19 -0.12 - - -0.12 1.0 -0.04 -0.0 - - - 0.06 - 0.12
- - - - - - - - - - 1.87 1.85 - - - - - - - 2.48 2.45 - - - - 3.42 - - 0.99 - -
- - -1.47 1.43 -1.37 - - - -1.51 - - - 1.18 0.36 - - - - - - - - 0.7 -0.45 -0.32 2.42 - 2.26 2.43 0.84 1.66
Bra022397 (LLR4)
 2.29 - - - 1.11 - - - - - - - - - - - - - - - - - 2.98 - 1.24 2.96 1.92 - - - 1.09
-1.96 -0.95 - 2.23 -2.13 -1.26 -0.21 -2.29 - - -1.36 -2.34 1.35 - -1.76 -2.06 0.18 0.12 - - - -1.38 0.13 -2.33 -1.07 3.39 -1.1 -0.54 0.39 -0.64 1.14
Bra023944 (PBL23)
 1.91 - 0.56 - - - - - - 0.59 - - - - - 3.15 - 0.81 1.61 - - - 2.19 - - 2.59 - - - - -
Bra024826 (AFA1)
 - - - - - - - - - - - 3.06 - - - - - - - - - - 2.93 - - 2.93 - 2.89 - - -
Bra025238 (CDG1)
 -1.66 - - - -1.02 -0.14 -0.94 -0.8 -2.24 0.61 0.39 -1.0 1.72 0.72 -0.21 -0.07 -1.0 1.87 -1.59 -1.0 -1.45 -0.03 1.34 -2.15 -0.16 1.11 0.22 0.18 -0.58 0.85 -0.06
- - - - - - - - - - - - - - - - - - - - - - 3.81 1.25 - 3.87 - - - - -
-0.49 -1.48 - 1.12 0.0 -0.71 - 0.53 - - - -0.07 1.17 - - - 1.47 -0.11 -0.49 - 0.66 - 2.44 1.91 - 2.05 - -1.56 - -0.17 -0.06
- - - -0.42 0.66 1.39 - - - 0.63 - 1.63 -0.76 - - 1.31 1.21 - 0.02 -0.82 - - 2.43 - 0.41 1.94 - -0.65 - - 1.7
Bra026102 (NRB4)
 2.44 - 0.18 -0.48 - - -1.5 - -0.54 - -1.6 - - - - - - 1.44 - 1.68 - - 2.76 0.2 - 1.2 0.19 - -0.22 -0.29 1.77
Bra026448 (AGP13)
 0.18 - - -0.11 - - - -1.56 -2.66 - - -0.99 0.35 - - -2.22 - 2.5 -2.59 - - - 2.88 - - 3.7 - - - -2.18 -
Bra027855 (bZIP4)
 2.69 0.7 - - 0.55 - - - - - - 0.83 - - - - - - - - 1.41 - - - - 3.04 - 0.72 1.55 - 2.08
Bra028488 (ELT4)
 - - -0.66 - 0.55 1.58 -1.06 -0.73 - - - -0.62 1.76 - -0.8 -0.74 -0.95 2.25 - 1.37 - - 2.8 - - 1.84 - -0.76 - - -0.7
- - - - - - - - - - - - - - - - - - - - - - - - 1.27 3.61 1.26 - 2.41 - 3.11
Bra030709 (GATA11)
 -1.67 -0.77 0.03 0.64 -0.93 -1.88 -2.81 -1.32 -0.07 -0.06 0.08 -0.17 -0.45 -0.87 -0.17 -0.35 -0.31 1.28 0.29 -0.77 -1.19 -2.15 1.16 0.41 0.26 1.89 0.5 -0.14 -0.89 0.6 -0.29
3.08 1.95 -0.1 - 1.83 - - - - -0.38 - - - - - - - - - - -0.14 1.39 -0.12 - - 1.46 - -0.01 2.07 -0.03 -
- - - - - - 0.27 - - 0.46 - - 0.75 - - - - 2.15 0.3 - 0.43 0.46 - - - 2.55 1.5 - 0.78 0.71 2.66
Bra032270 (GH9C1)
 - - - - - 2.61 - - - - - - - - - 2.28 - 2.84 - - - - - - - 3.4 - - - - 1.17
Bra032514 (ATL1)
 - - - - - - - - - - - - 2.29 - - -0.44 - 2.44 - - 0.36 - 2.8 0.22 -0.38 1.33 - -0.34 - 0.44 2.35
Bra032900 (ERF11)
 - - - - - - - - - - - - - - - 2.79 - - - - - - 3.61 - - 3.57 - - - - -
Bra033078 (MYB110)
 2.76 - - - 0.54 -1.1 0.35 1.21 -0.95 - -0.99 -0.67 0.18 - 1.25 0.72 - 1.52 1.08 - 0.9 -1.12 -1.01 - - 1.56 - -0.85 -0.81 - -
-2.0 - -2.49 0.42 - - - - - - -2.46 - -1.99 - - -0.07 - 3.24 - - - - 2.6 - - 3.33 - - -0.07 0.43 -
Bra034709 (SRF4)
 - - 2.51 2.53 2.39 - - - - - 1.7 - - - - - - - - - - - - - - 3.46 - - - - -
Bra035648 (AGR)
 - - - - - - - - - - - - - - - - - - - 2.9 - - - - 2.84 2.89 - - - - 3.16
- - - - - - - - - 3.38 - - - - - - 2.5 - - - - - - - - 3.9 - - - - -
3.06 - - -0.49 - - -0.48 - - - - - 0.77 1.46 2.38 - - 0.08 - 0.9 1.83 - - - - 2.08 - - -0.26 - -
Bra040418 (LCR18)
 - - - - 0.16 2.2 - - - - - - 2.28 - - - - 2.57 2.2 - - - 1.2 - - 2.93 - - - - -
Bra040481 (NMT1)
 - 3.07 - 0.69 - 0.31 - - - - - - - - - - 1.42 - - - 0.35 - - - - 3.72 - - - - 1.42

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.