1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_207 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

 Transpose table  Download table
Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000394 (LPEAT2)
 11.53 12.22 12.62 11.14 17.68 22.62 12.74 9.87 15.35 13.02 13.68 11.4 9.35 21.8 23.62 15.03 12.11 11.73 15.74 16.38 13.42 14.76 12.36 12.85 12.25 9.94 12.09 11.04 13.78 9.89 10.51
Bra000410 (UBC6)
 28.39 23.57 24.61 23.09 53.56 37.65 15.87 14.75 35.32 20.6 27.15 25.63 19.81 54.7 45.78 15.25 13.75 20.3 17.92 16.87 16.74 19.37 40.1 22.35 20.74 21.26 17.98 28.41 36.39 20.1 17.56
2.82 2.48 1.93 1.59 6.25 5.59 2.53 2.01 3.89 2.19 2.98 2.86 2.09 5.69 5.84 2.73 2.29 2.78 3.31 2.42 2.8 2.63 2.34 2.79 2.62 2.03 2.56 3.47 3.37 2.19 2.13
Bra002137 (DJC69)
 17.75 7.18 10.56 5.96 38.29 41.7 8.59 5.76 28.87 21.04 21.86 19.01 6.71 52.62 52.93 19.98 13.34 13.94 26.33 20.91 18.66 19.5 9.35 23.25 21.92 16.71 17.35 28.62 34.21 17.95 16.11
Bra003001 (DND2)
 16.05 12.27 14.14 10.55 37.02 36.81 17.72 20.12 25.91 19.35 18.47 20.96 16.78 44.21 42.33 19.61 18.45 12.37 23.61 18.23 20.17 21.92 14.25 20.47 20.84 15.75 19.37 25.42 28.59 21.15 20.6
Bra003753 (BLH3)
 7.88 8.1 7.28 6.93 19.03 26.11 14.88 9.73 13.94 8.49 9.22 10.04 6.13 25.17 22.21 13.33 12.5 8.58 10.48 12.55 15.94 12.65 7.88 8.72 7.73 5.49 7.05 8.3 9.07 6.03 7.36
Bra004796 (ITPK4)
 7.79 6.56 6.2 4.77 11.37 10.12 5.18 4.31 8.72 8.02 7.43 7.53 6.5 10.26 11.18 7.07 6.19 7.18 7.97 6.8 6.57 6.72 5.37 6.47 6.26 5.21 6.16 8.09 7.23 6.3 6.18
89.77 61.5 49.32 57.92 171.48 189.85 76.94 52.25 110.55 88.25 94.24 88.52 76.46 149.35 175.28 115.16 104.73 43.03 128.76 97.33 99.94 94.97 28.85 95.45 88.31 66.96 82.23 134.39 143.55 119.29 127.0
6.45 6.11 5.06 2.33 30.08 35.97 13.08 10.06 15.62 10.18 11.2 10.65 3.16 26.22 31.26 8.75 5.66 1.94 12.25 10.74 11.24 12.07 2.01 13.07 12.36 5.58 11.21 16.42 17.4 7.02 3.93
Bra006010 (ASK2)
 35.52 26.22 22.84 28.03 47.02 55.15 36.49 21.2 43.6 27.42 33.87 31.66 19.08 56.88 48.98 30.08 27.98 23.48 31.56 30.72 37.81 35.96 12.75 25.85 25.77 20.39 22.48 28.28 33.08 19.99 23.78
9.84 6.22 9.31 8.16 15.19 17.48 9.5 7.7 12.98 8.17 9.55 8.23 6.37 17.25 18.49 9.81 7.92 7.55 9.75 10.78 8.83 8.21 5.59 9.68 9.77 7.59 8.4 12.51 14.47 7.95 7.2
18.84 19.0 17.87 15.49 22.67 21.82 11.97 11.79 19.24 15.94 17.25 16.08 13.59 26.85 30.5 16.87 15.79 17.71 16.17 14.37 14.52 13.63 15.89 16.61 16.23 15.94 17.18 19.89 22.32 17.58 17.67
Bra009364 (PPP1)
 17.39 12.38 10.13 13.74 21.4 32.77 15.68 14.36 21.44 12.51 15.88 17.5 12.98 25.76 27.26 17.89 14.56 17.36 21.43 16.87 15.6 16.04 7.63 13.32 13.03 11.46 11.67 18.82 18.55 13.23 17.32
Bra009971 (PDM4)
 7.02 5.12 5.55 6.25 9.02 10.93 7.65 6.8 8.21 6.88 6.98 6.74 6.27 9.92 11.3 8.19 7.04 6.6 9.72 8.44 7.04 7.06 5.68 6.58 6.79 6.23 6.47 8.09 7.33 5.65 7.04
Bra010379 (RMA2)
 80.71 93.34 72.04 79.82 235.21 345.64 113.98 64.44 127.2 97.63 79.07 73.26 50.69 258.97 318.39 123.71 87.0 38.18 143.57 146.11 114.93 145.54 37.64 105.42 120.72 59.22 117.68 70.03 131.73 89.31 134.35
Bra010671 (AGT2)
 1.78 1.02 1.72 1.01 5.72 8.43 2.95 1.99 3.92 2.17 2.84 2.38 1.26 6.7 7.45 2.18 1.93 0.61 2.81 3.33 2.75 2.03 1.28 1.73 1.72 1.87 1.78 1.76 2.78 2.13 1.7
Bra011388 (nPAP)
 17.15 17.19 17.25 12.51 27.12 25.6 10.23 9.53 19.44 16.45 17.22 16.75 11.77 27.0 29.96 17.51 14.63 17.89 16.32 17.05 14.34 14.9 10.91 16.69 16.36 13.78 15.63 19.24 22.63 17.73 16.51
Bra011405 (GLDP1)
 1146.31 759.22 654.43 733.24 1558.48 2101.85 1255.29 973.87 1381.77 1142.87 1168.94 998.33 882.41 1761.56 2273.21 1460.9 1144.56 902.11 1507.22 1226.14 1130.81 1088.9 320.45 967.91 922.28 869.75 901.28 1562.42 1522.24 779.71 834.07
Bra011429 (FAB1A)
 7.76 6.12 5.84 5.62 14.73 14.46 8.18 5.92 9.63 7.86 8.4 7.94 5.52 14.67 14.6 9.9 8.89 8.8 9.81 9.11 7.62 7.85 6.02 7.0 7.71 7.29 7.34 9.69 10.5 6.94 8.48
37.82 35.92 37.96 26.3 57.42 54.68 22.36 17.0 36.3 32.82 35.1 31.78 24.05 57.32 63.67 35.68 32.0 40.88 37.61 34.2 27.5 28.35 26.9 30.88 32.89 29.33 31.82 33.77 44.96 39.07 39.42
Bra011750 (HMA1)
 41.97 33.0 25.79 30.71 57.19 62.04 36.65 31.26 47.96 40.72 40.19 41.04 31.72 59.63 58.65 44.63 40.56 25.71 43.97 41.72 36.88 39.59 21.59 39.19 38.38 35.79 39.92 47.85 53.87 40.23 42.35
Bra012790 (ATB' GAMMA)
 7.83 7.09 8.22 7.36 11.79 13.78 7.02 7.55 9.24 7.61 7.8 8.6 6.87 14.37 15.64 8.8 8.84 9.81 10.46 9.28 8.49 8.55 6.33 9.63 9.12 9.04 8.93 10.07 11.38 8.59 7.7
Bra012950 (ATG3)
 20.86 20.1 15.58 17.68 40.03 38.63 18.91 13.63 37.92 23.09 25.07 23.62 14.69 38.92 39.32 19.11 16.03 17.45 20.91 20.4 20.04 21.11 18.34 19.78 17.64 15.91 17.17 30.6 30.79 19.84 14.73
Bra013428 (AN5)
 291.69 129.71 114.81 95.51 482.99 423.89 150.06 134.18 286.0 201.8 206.4 229.46 79.18 396.4 361.48 229.57 185.54 209.66 267.14 182.04 224.63 213.4 29.32 178.91 190.97 186.78 210.75 194.82 269.01 274.87 279.8
Bra013612 (CDS2)
 8.36 7.53 5.54 4.59 12.36 14.84 4.56 5.17 7.41 4.1 6.15 4.87 3.6 12.26 15.04 5.61 3.88 3.35 5.25 5.28 5.22 5.1 4.45 7.37 7.58 6.76 7.19 8.67 11.01 6.01 7.85
14.38 11.98 11.44 12.77 19.83 19.72 11.4 10.9 18.99 14.39 15.89 15.06 10.41 25.45 22.88 13.73 12.55 11.02 14.45 12.83 12.99 14.51 9.42 12.67 11.5 10.98 11.79 17.06 16.19 10.31 11.44
13.9 13.63 16.57 11.06 24.34 25.81 9.0 7.5 17.41 13.64 15.63 14.37 9.87 31.22 31.03 15.51 13.63 14.37 16.22 13.88 11.37 15.32 13.53 15.87 15.69 12.15 15.06 17.42 19.58 13.16 11.81
Bra017303 (PTPMT1)
 60.21 54.36 54.95 54.86 111.55 141.83 67.96 39.37 93.21 70.84 77.38 70.36 43.1 127.96 138.97 80.51 75.1 66.21 89.0 83.12 68.52 78.58 37.62 70.96 73.69 55.35 69.17 77.55 96.02 67.21 66.56
Bra017346 (PRP4KA)
 12.51 11.52 13.59 9.51 18.88 18.58 9.08 8.4 13.96 11.96 13.81 11.37 9.64 21.05 22.95 13.56 11.98 14.11 12.04 12.63 9.6 11.23 10.55 9.57 9.84 8.83 9.35 11.14 14.24 13.18 13.89
Bra017424 (IME)
 22.73 18.82 18.36 13.36 37.54 24.94 13.93 14.72 29.96 18.9 16.29 25.06 12.31 48.21 46.43 15.28 15.83 21.85 27.28 20.99 15.88 18.92 7.48 19.38 17.52 11.03 18.22 21.26 27.05 24.43 23.88
17.23 16.93 21.34 12.62 35.88 43.53 21.93 15.62 24.06 17.97 21.8 17.94 14.46 38.25 46.49 25.5 20.1 12.22 24.89 22.82 22.17 23.25 6.44 20.26 19.66 12.93 17.6 25.47 27.64 18.27 19.74
Bra018726 (DCD)
 81.51 77.26 79.43 63.3 123.59 103.56 70.31 54.38 97.14 93.44 85.6 77.67 71.78 119.55 120.28 82.98 80.03 77.6 91.4 84.92 82.62 84.93 60.02 82.97 84.18 79.57 81.58 88.49 91.96 88.55 78.93
161.33 139.54 113.92 118.08 224.15 278.0 187.67 125.96 209.76 128.42 157.65 149.94 119.43 289.21 275.92 164.94 147.46 112.84 187.21 184.37 170.08 167.45 95.54 140.01 140.72 114.58 125.23 177.96 212.76 119.53 141.0
Bra019332 (CAD2)
 27.85 17.29 14.91 20.23 49.62 55.92 32.47 28.05 36.39 33.33 31.63 32.53 31.4 49.48 50.17 36.76 37.43 26.93 35.46 36.48 32.57 33.84 24.91 29.19 29.66 27.58 30.25 31.39 34.29 30.76 32.92
15.42 14.85 10.84 11.83 30.05 42.53 25.23 16.82 17.61 15.38 17.72 16.46 15.54 31.45 33.38 26.49 26.58 11.85 20.7 26.62 26.54 21.84 9.81 17.87 17.82 15.06 16.8 18.49 20.96 11.59 13.75
166.24 119.73 109.47 100.52 305.68 255.69 115.16 73.45 166.16 132.7 133.27 124.6 75.91 203.89 223.23 143.95 115.23 85.79 124.95 108.01 123.92 117.81 42.85 116.99 108.04 95.98 103.07 133.35 117.82 97.52 78.42
Bra022147 (NF-YB2)
 55.78 58.65 53.97 60.01 118.11 171.03 75.13 44.31 75.93 69.91 60.76 61.42 41.13 155.74 167.05 86.82 86.17 66.19 91.18 82.6 95.63 79.74 23.83 66.18 65.47 65.25 63.48 62.84 76.24 50.8 71.09
35.25 32.27 28.63 26.2 55.02 52.79 23.08 19.35 38.82 34.67 34.64 34.92 20.77 55.35 59.24 34.7 29.38 25.15 37.0 33.74 30.5 32.61 13.01 30.1 31.01 29.08 32.57 33.93 40.61 34.7 32.77
Bra024519 (NPF5.10)
 6.8 6.05 5.56 6.53 14.84 17.32 6.41 5.92 10.24 8.84 9.99 9.27 5.62 16.34 18.91 10.33 8.91 9.04 9.11 8.84 8.55 8.25 4.44 7.85 7.75 6.49 7.92 8.36 9.66 8.2 10.15
Bra024833 (IME)
 8.62 6.9 6.42 4.13 13.42 13.91 5.05 5.16 11.43 8.23 9.28 9.4 3.65 17.37 20.17 7.64 6.97 6.63 11.45 9.19 8.96 8.92 3.96 7.56 6.75 4.76 6.99 5.66 8.35 6.64 6.98
Bra024853 (RIE1)
 4.79 6.31 4.99 4.26 8.7 9.12 3.3 3.25 6.81 4.09 4.98 5.01 2.76 11.39 10.79 4.51 3.74 3.0 4.45 3.88 4.33 3.63 1.88 5.62 5.76 4.63 4.25 8.87 7.6 5.37 3.02
Bra026460 (ACHT1)
 6.46 6.23 5.92 6.02 12.73 11.22 5.05 3.93 7.4 6.63 5.64 5.14 4.8 11.86 11.08 5.8 6.69 5.41 6.62 6.31 5.08 6.19 6.88 7.58 5.82 5.36 6.29 7.63 8.86 5.26 5.52
Bra026953 (AFB3)
 27.3 24.58 30.03 24.17 52.41 57.06 33.29 32.26 37.85 31.78 30.67 27.2 34.83 54.18 55.72 32.73 33.57 23.74 32.02 37.98 36.04 40.37 18.42 31.17 30.68 22.23 31.05 31.65 37.15 29.14 31.4
Bra027227 (APG8H)
 154.0 134.77 134.28 104.44 262.15 270.68 113.84 81.78 239.93 193.85 197.1 199.68 134.28 282.95 335.49 156.01 137.54 160.48 209.5 170.19 161.42 186.15 113.63 148.97 145.89 113.42 158.54 175.03 183.45 157.28 131.87
Bra029537 (ALN)
 47.31 21.37 21.17 22.14 108.36 102.12 15.47 9.7 56.28 28.41 55.5 21.04 12.96 74.79 76.72 24.43 15.48 4.55 14.75 25.84 28.17 31.45 8.75 29.88 26.21 25.45 20.72 66.76 78.1 18.16 10.46
Bra029670 (SIA1)
 106.46 71.14 47.1 76.62 121.04 172.18 121.07 97.53 118.07 86.18 85.54 93.63 70.55 146.24 155.49 99.6 77.89 86.18 95.92 113.19 104.46 90.25 76.15 81.69 83.5 76.71 79.34 120.97 118.49 55.89 81.19
7.31 4.25 3.7 3.27 16.52 15.14 6.06 4.63 9.46 6.39 6.5 7.57 2.96 14.18 13.24 7.19 5.74 4.83 8.7 7.88 5.87 7.39 0.59 5.04 5.0 3.67 5.06 6.84 8.92 8.06 5.35
9.63 7.39 7.75 7.8 11.74 11.71 7.35 6.91 9.59 8.44 8.68 8.23 6.15 11.91 11.94 9.17 7.81 6.4 8.92 8.43 7.95 7.45 4.16 7.67 7.64 7.5 7.82 9.68 10.05 7.84 9.01
6.24 4.73 4.62 3.77 11.56 16.21 6.98 4.98 7.93 6.38 6.56 5.51 4.86 12.05 11.67 6.91 6.91 3.71 7.07 7.56 7.68 6.58 5.48 7.27 6.78 3.35 6.24 7.13 9.32 6.18 5.8
1.72 1.74 2.19 2.16 4.78 4.63 2.22 1.87 2.78 3.18 1.97 2.18 1.67 5.84 4.62 2.74 2.37 2.08 2.64 2.47 2.49 2.91 2.69 3.11 2.99 2.68 2.52 3.32 3.34 2.45 2.32
Bra032713 (HIL1)
 17.78 18.72 13.42 15.83 23.68 27.07 16.54 16.31 17.82 18.38 17.94 16.45 13.7 25.02 26.09 17.14 16.11 13.13 16.49 16.78 15.39 17.26 11.79 17.42 17.66 16.97 16.11 18.91 20.16 14.84 19.73
7.45 8.32 7.25 6.29 11.41 11.61 6.93 5.86 10.93 7.75 9.04 9.31 5.81 12.14 13.12 7.6 7.0 6.2 7.38 8.71 8.41 7.92 4.75 7.04 7.77 6.05 7.34 8.16 8.96 7.96 7.48
Bra035459 (MSL3)
 22.35 15.85 14.78 17.01 41.15 40.19 21.04 16.98 31.71 22.85 25.05 23.37 15.01 37.48 43.03 22.06 21.09 22.18 28.0 25.67 21.81 23.63 13.16 21.31 20.15 17.12 18.83 28.37 28.26 18.9 19.46
Bra035728 (AtUSB1)
 5.51 6.4 4.75 3.56 7.45 7.86 3.86 3.15 4.49 3.64 4.27 3.54 3.39 6.25 7.87 3.26 3.22 3.55 3.94 3.51 2.59 4.65 4.57 4.54 4.7 4.31 4.2 4.85 5.93 4.54 6.03
Bra036297 (STP7)
 2.91 2.67 2.38 0.95 10.99 13.19 4.95 3.9 6.29 4.89 5.07 5.64 2.36 12.22 12.87 6.19 5.19 4.36 7.0 5.89 6.37 7.33 1.68 4.27 4.54 2.05 4.22 3.88 5.07 4.1 4.26
Bra036491 (FLY2)
 8.43 6.62 8.57 7.29 13.65 15.95 7.58 6.22 9.72 9.75 11.35 9.53 7.15 14.95 16.49 8.94 7.86 8.23 12.39 9.83 7.53 9.9 4.43 7.73 8.11 7.09 8.04 7.89 8.95 8.01 7.22
Bra036926 (TT15)
 6.43 4.96 4.46 5.52 12.9 13.25 6.85 7.57 9.69 7.56 8.81 9.09 7.69 13.67 14.46 9.97 8.74 8.54 8.1 8.45 6.91 7.72 6.65 6.93 7.41 7.33 7.21 8.45 9.05 7.01 7.94
Bra037862 (ATG14b)
 11.65 9.49 9.53 9.47 20.52 21.54 9.55 6.62 15.54 11.12 11.51 12.02 7.1 23.14 28.28 12.14 11.72 11.62 13.67 12.29 11.18 13.62 8.88 14.19 12.82 11.31 13.01 15.73 18.32 10.85 8.83
Bra037966 (RSH3)
 22.61 15.44 9.41 9.77 25.72 31.9 9.34 9.82 37.8 15.22 18.07 17.1 8.53 56.75 70.28 12.37 11.91 5.02 13.22 12.16 18.95 16.88 17.39 20.1 18.71 15.32 17.77 42.8 44.17 21.9 15.8
118.59 108.87 84.9 94.03 247.87 297.09 155.57 110.02 184.36 132.71 143.54 119.52 123.28 245.28 274.22 149.84 143.0 92.8 198.57 157.89 168.87 177.48 126.58 154.72 140.02 109.09 145.05 177.74 182.7 117.8 122.12
Bra038339 (WIT2)
 4.58 3.94 3.9 4.19 6.1 7.88 5.01 4.37 4.68 4.1 4.82 4.08 3.59 7.26 6.49 6.13 5.17 3.45 5.8 5.17 5.37 5.27 4.05 4.3 4.44 3.12 3.91 4.83 5.05 3.75 3.73
Bra038424 (SH3P1)
 52.8 43.78 37.07 37.54 87.96 110.99 54.06 45.3 64.38 53.42 50.39 46.99 34.95 94.86 94.54 42.62 40.98 43.65 55.09 45.9 44.93 50.28 27.28 59.25 56.27 42.7 52.47 65.27 71.8 46.09 41.68
Bra039295 (UBC6)
 50.49 45.77 43.69 46.88 81.82 75.09 28.74 23.38 59.88 41.37 53.99 45.13 32.67 77.56 74.32 36.53 30.81 21.88 30.84 38.86 35.84 38.27 32.07 38.35 37.37 39.89 35.65 56.73 62.11 34.45 29.63
6.84 6.47 7.51 5.59 10.2 10.97 6.07 5.45 8.42 7.41 7.42 7.3 5.25 12.0 13.42 8.05 7.43 7.77 8.04 8.29 6.99 7.51 7.74 8.45 7.82 6.93 7.91 8.76 10.44 7.94 7.84
Bra040593 (NBS1)
 4.81 4.93 3.97 3.82 6.78 7.71 3.55 3.16 4.06 3.32 3.9 3.43 3.58 6.63 7.58 4.1 3.41 3.18 4.85 3.81 3.85 4.18 3.67 4.07 3.91 3.23 3.98 4.8 4.7 3.76 4.03
1.89 0.65 0.72 1.01 9.63 10.42 5.21 4.35 5.99 5.94 5.1 5.82 4.07 12.12 12.81 6.45 7.54 5.38 5.82 5.44 4.54 4.42 2.35 5.68 5.85 4.62 4.04 5.03 5.94 4.42 4.82
Bra040648 (RLP31)
 9.02 6.55 6.56 6.99 12.47 15.82 10.94 8.89 11.87 8.34 8.95 8.77 6.79 15.27 15.27 7.89 7.65 5.45 8.47 9.09 8.01 8.38 3.3 8.59 8.13 5.71 7.83 8.92 10.71 8.0 7.64

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)