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Heatmap: Cluster_35 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000084 (PECT1)
 6.07 7.68 5.76 6.17 6.8 5.32 7.75 9.08 4.64 4.74 4.72 5.34 10.1 6.15 6.74 7.33 6.82 15.53 7.58 6.69 6.84 5.87 8.9 7.03 6.61 6.29 7.53 6.33 4.8 6.16 6.58
Bra000498 (SLP)
 4.77 6.72 8.76 10.85 4.77 7.03 13.15 13.48 4.0 12.52 8.9 8.64 30.92 5.98 7.24 17.04 18.99 54.4 22.1 11.36 14.08 9.71 29.3 13.37 12.66 13.85 12.57 12.68 4.21 8.42 21.2
Bra002954 (TRP2)
 19.09 18.25 24.41 22.46 18.15 21.2 28.36 36.26 12.82 19.39 15.49 16.79 30.16 20.48 19.6 24.25 25.19 59.56 21.41 21.43 20.12 19.24 30.91 25.42 27.93 22.2 26.89 20.75 16.62 22.28 29.29
13.64 24.52 19.72 16.01 9.9 16.19 21.5 24.67 11.39 19.44 16.44 18.04 21.01 15.44 16.1 19.14 22.27 48.53 26.41 16.69 15.94 20.13 25.54 14.22 13.65 13.47 14.23 6.71 9.58 21.02 31.1
Bra003485 (PLY)
 1.17 1.34 2.44 1.37 1.87 0.89 1.53 2.27 1.79 2.69 2.38 1.63 3.73 1.8 1.81 2.79 2.61 12.69 3.45 1.99 1.96 1.9 2.11 1.36 1.48 1.43 1.39 0.97 0.94 0.76 0.98
2.44 1.63 1.44 2.46 2.47 2.06 3.91 3.77 2.2 3.53 5.18 3.85 5.32 3.66 3.69 4.4 5.8 16.21 4.5 3.54 4.17 3.73 2.34 3.29 2.66 4.11 3.03 2.21 1.45 2.1 3.31
151.9 120.55 125.35 127.41 51.3 59.26 115.11 99.44 125.69 160.3 127.5 145.45 84.47 43.24 24.1 129.44 151.83 444.99 323.88 178.23 164.53 157.64 9.47 134.51 141.35 165.44 138.51 73.5 83.81 143.48 176.91
Bra004628 (GPDHC1)
 0.19 0.23 0.27 0.46 0.72 0.76 0.77 0.58 0.94 0.85 0.65 0.63 2.36 1.17 0.9 1.23 1.24 5.31 1.28 1.53 0.9 1.32 1.46 0.74 1.01 0.8 0.79 0.46 0.5 0.47 0.77
Bra006273 (GASA14)
 4.29 2.87 7.08 3.1 7.63 3.2 1.38 3.21 8.2 23.54 20.92 12.66 30.64 12.43 14.36 34.73 12.04 101.92 33.6 17.58 14.33 6.18 6.77 2.12 2.55 9.88 1.68 1.7 0.88 2.65 1.13
Bra006813 (BIO3)
 0.06 0.04 0.11 0.06 0.08 0.03 0.23 0.39 0.08 0.03 0.17 0.09 0.65 0.08 0.11 0.13 0.09 0.94 0.06 0.12 0.06 0.07 0.34 0.16 0.19 0.26 0.11 0.16 0.1 0.09 0.3
Bra007218 (BLP3)
 10.22 11.21 15.04 15.75 13.41 11.29 24.52 27.73 9.91 17.53 14.66 11.31 37.18 14.63 12.43 25.05 25.98 96.49 23.67 19.21 19.91 20.05 26.86 24.25 24.24 24.51 23.94 17.09 12.13 13.16 22.04
Bra007569 (FLA10)
 0.47 0.47 0.97 0.56 2.43 1.15 3.84 5.03 4.77 4.07 3.94 3.56 10.77 4.69 4.49 7.25 6.09 18.13 5.65 4.07 3.18 3.14 4.96 3.3 2.9 2.79 2.39 1.73 2.22 2.1 3.14
Bra009035 (AtDTX28)
 0.13 0.03 0.12 0.36 0.53 2.85 9.29 5.04 4.43 2.55 2.22 2.99 14.83 3.08 3.91 14.99 8.75 36.94 7.04 2.89 4.26 3.46 8.14 3.61 2.63 2.58 3.03 3.65 6.08 2.82 10.15
Bra009130 (TRP5)
 2.01 1.62 2.89 1.04 0.98 1.44 4.7 5.24 1.66 2.26 1.85 1.99 3.99 2.16 2.03 3.35 2.84 9.16 3.63 2.79 2.54 1.88 3.23 2.98 2.81 2.55 2.67 1.67 2.38 2.2 2.84
Bra009148 (CYP71B11)
 0.0 0.03 0.0 0.0 0.03 0.32 0.06 0.04 0.19 1.05 0.11 0.13 2.52 0.44 1.42 0.74 0.66 5.06 0.43 0.17 0.16 0.94 2.15 1.23 1.17 0.68 0.93 0.13 0.37 0.01 0.47
Bra009413 (KCS11)
 5.32 5.52 7.54 6.55 6.5 10.43 15.99 17.18 7.8 10.59 9.62 9.15 19.77 11.44 10.43 18.83 16.45 37.66 15.96 14.28 12.33 13.2 19.12 11.93 12.45 9.25 11.64 7.85 9.11 8.88 11.38
0.0 0.0 0.03 0.24 0.92 0.78 1.92 1.69 0.66 1.18 0.71 0.58 3.46 1.41 1.42 2.59 1.8 5.21 1.27 1.05 1.09 0.69 0.78 0.83 0.62 0.91 0.92 0.36 0.52 0.33 0.68
Bra011449 (DHS2)
 37.34 40.07 44.19 44.36 44.51 43.12 30.58 29.11 23.9 44.43 33.64 32.17 44.12 31.51 38.68 50.88 51.98 93.76 57.99 41.55 41.61 41.82 62.11 35.45 36.18 35.12 38.59 34.18 24.58 43.03 56.34
40.27 38.79 34.69 46.09 39.95 33.74 44.84 37.11 33.45 59.52 51.2 48.07 47.69 17.04 20.28 52.59 69.24 122.84 117.31 53.39 51.49 46.7 25.13 47.22 48.74 46.32 48.63 63.47 31.79 39.4 40.37
Bra012130 (RALF34)
 4.46 6.11 10.01 8.36 16.44 5.35 16.54 39.38 27.63 18.59 32.41 17.36 69.88 22.58 15.77 30.19 20.02 119.33 38.98 30.24 24.78 16.89 38.38 38.11 40.03 34.02 33.97 31.32 21.56 21.45 34.95
Bra015719 (IGMT5)
 6.08 5.31 4.67 5.26 6.25 4.05 14.13 27.67 9.33 23.77 8.58 9.87 37.68 13.01 9.73 29.09 25.86 67.08 20.6 16.78 17.46 16.98 10.89 14.09 13.01 9.2 13.11 7.83 8.44 6.15 13.51
Bra016653 (AVP1)
 54.03 55.27 53.12 67.58 55.73 54.32 79.77 97.11 40.22 65.4 51.13 52.29 93.25 65.2 68.18 88.15 89.55 170.24 98.46 62.83 61.49 64.71 45.69 51.76 59.16 62.15 67.08 52.72 44.63 49.65 61.35
1.75 2.19 2.3 1.72 3.09 2.54 3.99 6.74 1.66 2.06 1.72 2.25 4.85 2.31 3.35 4.49 5.09 13.01 9.13 3.81 2.68 2.64 6.78 2.46 2.21 1.73 2.95 1.7 1.96 2.29 2.86
Bra019044 (ENODL2)
 3.93 3.94 7.66 4.79 10.41 7.69 19.26 19.0 12.59 31.11 21.5 21.86 27.41 17.97 24.55 46.84 44.29 128.53 38.51 30.31 26.53 29.63 14.96 25.52 28.96 26.19 29.06 9.13 7.16 8.77 12.26
2.35 2.81 5.12 4.56 4.86 4.85 8.1 7.82 5.03 5.51 6.55 5.28 10.22 7.81 7.43 7.67 7.11 17.96 6.0 7.01 5.84 5.59 7.8 7.56 7.44 7.28 6.2 4.57 5.5 4.23 7.55
Bra023111 (ADK)
 9.11 8.84 8.21 9.72 16.2 16.94 16.48 27.32 7.57 9.97 7.82 10.22 22.66 12.74 15.09 17.08 16.08 64.91 28.58 11.91 13.86 10.5 25.77 9.32 11.78 10.29 10.6 10.68 8.02 10.34 12.85
Bra024137 (PAO5)
 0.36 0.17 0.37 0.24 1.13 1.0 1.55 1.88 1.18 1.72 1.12 1.27 2.7 2.1 2.57 2.96 1.97 7.7 2.75 1.58 1.98 1.15 1.5 1.06 1.19 0.95 0.88 0.79 0.74 0.47 0.68
Bra024751 (CLE43)
 0.83 1.93 4.35 4.86 4.62 2.67 10.1 14.04 12.29 16.41 15.36 14.63 31.34 9.81 12.58 11.11 13.2 83.88 26.32 12.98 8.37 15.73 8.8 13.82 13.67 5.41 13.98 3.71 3.05 3.87 8.91
0.05 0.03 0.04 0.05 0.28 0.14 0.11 0.18 0.17 0.17 0.14 0.19 0.61 0.3 0.3 0.52 0.28 1.04 0.28 0.26 0.11 0.14 0.51 0.32 0.36 0.25 0.23 0.19 0.17 0.2 0.31
8.87 9.55 10.78 10.82 17.47 23.15 29.58 25.39 15.35 17.57 16.35 17.29 30.28 22.51 17.56 30.19 27.55 60.76 27.24 23.34 23.84 21.19 25.14 22.72 25.1 17.43 19.52 18.91 15.61 12.41 20.5
1.78 1.66 1.76 0.93 2.37 2.21 2.68 3.93 1.51 2.22 1.61 1.6 3.6 2.42 2.23 2.73 4.04 6.96 3.2 2.39 2.03 2.37 3.82 1.95 2.45 1.36 2.45 1.36 1.71 2.21 3.2
Bra029297 (ML1)
 5.01 4.03 4.96 2.75 6.51 7.3 10.29 12.25 6.64 7.16 6.75 6.31 10.19 8.28 8.85 10.67 11.97 21.6 13.8 9.44 7.08 8.39 11.94 8.3 8.99 4.54 9.67 5.15 6.09 6.35 8.71
Bra029831 (PAL4)
 2.01 1.78 2.76 3.04 3.41 5.16 11.07 10.81 4.24 5.63 5.62 4.92 12.44 4.85 9.3 13.55 10.85 31.57 7.32 10.05 6.05 5.41 7.5 4.96 4.84 3.0 4.18 2.52 3.35 2.88 4.46
Bra029968 (RLP44)
 0.68 0.82 1.8 1.3 1.74 1.53 1.94 1.77 2.01 1.77 1.62 2.32 5.45 2.78 2.55 2.8 2.05 9.06 3.16 2.54 2.38 1.94 3.36 4.24 3.34 3.49 3.0 1.94 2.1 1.72 1.93
Bra030799 (iPGAM1)
 23.84 22.75 24.43 23.54 34.16 41.4 66.97 85.49 25.3 43.0 36.26 37.51 93.73 32.24 45.6 50.21 56.48 153.38 58.46 54.87 50.05 51.06 101.44 56.49 64.87 50.25 71.85 47.69 37.92 57.16 52.26
Bra031329 (CWLP)
 22.98 15.01 54.73 18.43 115.9 46.31 136.69 200.28 76.02 168.91 92.5 119.18 320.05 88.85 143.77 252.85 286.62 1317.6 139.2 122.41 135.01 174.48 319.48 150.63 165.38 145.04 172.29 217.95 77.57 57.04 47.19
12.03 13.17 15.34 19.02 12.51 14.04 36.53 46.91 11.75 18.01 18.78 14.85 40.4 18.98 24.54 33.73 32.79 85.7 35.64 26.01 22.29 17.99 37.11 16.58 18.88 18.99 18.5 17.52 12.23 17.05 28.72
8.75 11.23 6.48 11.46 8.41 17.18 25.77 20.29 23.37 19.2 29.51 24.61 15.6 11.53 12.38 30.32 31.26 96.7 46.94 32.95 26.38 25.4 2.57 15.61 15.62 13.31 14.97 15.18 16.56 11.67 15.15
Bra032872 (AtDTX28)
 0.1 0.4 0.47 0.69 1.3 9.9 18.97 10.83 8.45 6.33 4.15 6.88 29.31 5.74 4.19 26.47 17.18 73.68 15.26 7.28 7.04 8.62 17.29 10.99 8.05 5.62 5.2 6.86 12.48 4.74 20.24
12.6 16.09 21.48 21.87 5.39 11.24 29.86 27.09 10.52 15.28 14.11 10.93 22.5 6.83 9.88 16.21 20.31 83.35 41.91 18.12 16.86 12.12 10.01 18.12 24.39 26.12 24.56 11.5 13.52 17.36 29.53
Bra033526 (HCT)
 0.8 2.31 4.98 2.1 1.43 0.77 1.73 2.29 2.08 2.1 3.2 2.28 11.17 2.39 2.79 5.11 4.6 17.41 2.79 1.86 2.22 2.57 5.51 4.11 4.63 3.19 2.76 1.01 2.59 2.54 4.7
0.0 0.0 0.0 0.0 0.0 4.43 14.55 15.56 14.6 10.22 13.44 16.95 16.68 12.91 14.99 14.79 19.04 81.81 26.82 27.48 22.48 18.59 0.19 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
0.31 0.27 0.2 0.11 1.01 0.8 1.81 0.97 0.99 1.6 1.04 0.76 3.07 1.98 2.22 2.93 2.8 7.19 2.03 1.59 1.52 1.64 2.01 1.88 1.9 1.51 2.01 1.4 1.01 1.02 1.46
Bra036802 (RALF34)
 1.02 0.55 0.97 0.41 0.81 0.15 2.38 5.3 3.7 2.89 0.8 2.5 10.91 1.75 1.32 4.68 5.87 22.37 3.06 2.27 5.08 2.15 7.91 2.91 3.69 2.87 4.52 1.91 1.69 2.3 3.05
Bra040136 (RAF1)
 38.32 38.32 33.91 40.0 29.26 25.09 38.16 46.31 10.66 30.14 19.46 25.16 50.01 12.48 15.63 48.22 59.11 121.2 65.16 38.03 42.9 35.82 33.36 35.09 38.54 35.67 44.55 37.12 17.88 37.86 51.12
Bra040479 (PPa3)
 0.0 0.0 0.0 0.12 0.04 0.14 0.35 0.0 0.45 1.06 0.54 0.41 0.13 0.25 0.26 1.02 0.75 4.08 1.23 0.7 0.38 0.9 0.0 0.09 0.0 0.05 0.0 0.0 0.0 0.0 0.05

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)