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Heatmap: Cluster_188 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000393 (SOC1)
 - -0.97 - 0.35 4.39 2.46 -2.43 - -2.5 -3.0 -2.88 -2.3 -1.37 -3.81 -2.71 - - -1.68 - - - -4.06 -1.27 - - -1.92 -3.75 -3.61 -3.82 - -
Bra000425 (SINAL7)
 - - - - 4.27 3.55 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra001325 (HY2)
 -0.38 -0.78 -0.52 -0.7 0.91 0.26 -0.4 0.02 -0.01 0.04 -0.13 -0.56 0.32 0.45 0.39 -0.18 -0.37 0.44 -0.16 -0.33 -0.29 -0.29 0.91 0.03 -0.28 -0.34 -0.31 0.23 -0.18 0.08 0.25
Bra001367 (LGO)
 -0.65 -0.58 -1.2 -2.57 1.98 0.44 -0.02 -0.54 -0.17 0.23 -0.28 0.08 -1.2 0.27 0.79 -0.44 -0.51 -0.38 0.1 -0.41 -0.27 -0.04 0.09 0.1 0.45 -1.7 -0.28 0.65 -0.06 0.31 -0.85
Bra002004 (AMS)
 2.69 -0.32 0.15 -0.13 0.92 0.51 -0.39 - -0.14 -0.24 1.27 -1.38 - -0.07 - -1.49 -0.63 - - -0.72 -1.87 - -0.14 -0.85 -0.2 0.8 -0.01 1.49 1.03 - -1.6
Bra002065 (ITN1)
 -1.23 0.37 0.83 -0.43 2.47 2.51 1.34 -1.53 - -0.45 - -1.31 -1.12 - 1.56 - - - 0.7 - 0.31 1.64 -0.18 - - -1.38 - -0.27 - - -
Bra004424 (ROXY9)
 -0.52 -2.81 -3.77 -2.96 1.26 1.55 -1.0 -2.82 1.0 -0.33 0.32 -0.43 -6.16 1.24 0.54 -0.5 -0.08 -2.29 0.59 0.03 0.14 0.06 -5.22 0.09 -0.82 -1.27 -0.99 1.48 1.17 -0.14 -1.66
Bra004928 (SOC1)
 -1.2 -3.13 -4.5 -3.1 3.62 2.15 -3.35 -4.57 -2.0 -2.83 -1.56 -3.36 -2.11 1.23 0.98 -2.25 -2.31 1.35 0.83 -2.16 -2.2 -1.95 -0.98 -2.22 -1.9 -1.71 -2.42 -0.74 -1.45 -4.43 -3.32
Bra005510 (RLP27)
 2.35 0.07 0.56 1.73 3.43 2.42 - -0.46 -0.51 - - -0.46 - - - -0.07 - - - - -0.29 - - - - - - - - - -
Bra005580 (VCC)
 -0.39 -1.71 -1.42 -2.03 1.69 0.16 -1.45 -1.15 -1.04 -0.32 -0.52 -0.65 0.65 0.95 1.06 -0.12 -0.48 0.43 -0.55 -0.96 -1.63 -0.39 1.12 0.3 0.16 -0.79 0.0 1.09 -0.18 0.12 -1.1
Bra007933 (DYAD)
 2.03 - - - 4.18 3.13 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra007972 (XAL1)
 -0.46 -2.5 -2.83 - 1.65 2.02 -1.04 -1.32 -0.82 -0.63 -0.44 -0.61 0.21 1.24 0.96 1.02 -0.82 -2.49 0.13 -1.73 -1.05 -0.72 -1.54 -0.61 0.63 0.52 0.04 0.78 -0.32 -0.3 -2.41
Bra009398 (BX3)
 -0.55 -0.95 -0.44 -1.07 0.54 0.43 -0.27 -0.05 -0.46 -0.2 -0.04 -0.1 0.24 0.43 0.69 -0.1 -0.23 -0.14 0.09 -0.01 0.05 0.1 0.27 0.16 -0.09 -0.12 -0.06 0.47 0.05 -0.13 -0.01
Bra010066 (ACX4)
 2.05 - -0.13 - 0.13 3.14 0.13 - - 0.34 - 0.02 - - - - - - - - - - 2.92 2.02 - - - - - - 0.06
-0.41 -2.98 -1.12 -0.76 1.07 1.03 -1.24 0.9 0.68 0.81 0.67 0.5 0.19 1.52 0.84 0.7 0.11 -1.61 -0.03 0.72 -0.01 -0.26 -0.98 -3.33 - - -0.59 -1.1 -0.1 -2.22 -3.16
Bra012271 (VTL1)
 0.16 -0.85 -3.28 -2.16 1.56 -1.51 -1.94 -2.27 -0.62 -0.6 -0.31 -0.63 1.89 -2.27 0.83 -0.61 0.02 0.58 -1.14 -2.35 -0.46 -2.28 1.02 0.03 0.48 1.31 -0.68 1.07 0.18 0.22 -3.39
1.95 -1.38 -1.52 -1.32 3.71 3.61 - -0.36 - - - - - - - - - - - - - - - - - - - - - - -
Bra014952 (CAS1)
 -1.12 -2.28 -0.92 -2.08 1.45 0.26 -0.25 -0.68 -0.14 -0.2 -0.05 0.07 -1.63 0.74 0.58 -0.28 -0.46 -0.5 -0.02 0.1 -0.6 0.18 0.88 0.25 0.45 0.16 0.11 0.44 0.26 -0.19 -0.42
Bra015326 (BDL)
 0.33 -0.36 0.01 -0.29 2.01 1.8 -0.85 -0.85 -1.07 -1.1 -0.33 -0.99 0.11 0.95 1.42 0.01 -0.81 0.65 0.12 -1.58 -1.12 -1.53 -0.51 -0.6 -1.21 0.17 -1.54 -0.69 -1.1 -1.3 -1.08
Bra015546 (LAX2)
 0.11 1.46 - 1.22 1.53 2.81 1.27 - -3.51 - - - -1.76 -1.91 - - -3.21 -1.7 -2.87 - - - 1.61 0.3 -0.46 -2.78 -0.58 -0.89 0.84 -0.4 1.28
Bra015784 (AMY2)
 0.48 -0.6 -1.47 -0.48 1.11 1.38 -0.46 -0.93 -0.06 -0.21 -0.17 -0.15 -1.05 0.68 0.89 0.13 -0.45 -2.05 -0.52 -0.61 0.31 -0.08 -0.88 0.27 0.13 -0.12 0.09 0.67 0.02 -0.51 -0.86
Bra016025 (PS2)
 -2.04 -4.65 -6.63 -3.43 1.18 1.2 -1.22 -1.02 -0.07 -0.75 -0.0 -0.37 -0.37 0.26 1.23 0.08 -0.67 0.24 1.1 -0.09 -0.3 -0.37 -1.12 0.8 0.53 -0.08 0.23 1.0 0.26 -0.99 -1.0
-0.82 -1.62 -0.97 -1.52 1.5 1.53 -0.15 -1.09 -0.31 -0.51 -0.02 -0.07 -0.71 0.71 0.59 -0.13 -0.55 -0.33 0.42 0.15 0.12 -0.05 0.14 0.41 0.36 -0.39 -0.47 -0.39 0.09 -1.05 -0.86
Bra016556 (TET11)
 - 1.5 - - 2.22 3.68 - - - - - - 1.31 - - - - - - - - - - - 3.04 - - - - - -
-2.47 -0.87 -0.93 -1.63 1.74 1.57 0.26 -0.63 0.75 0.57 0.06 -0.54 -0.26 1.61 0.51 0.15 -0.35 -0.7 0.74 0.02 -0.28 0.07 0.49 -2.22 -1.28 -1.41 -3.19 -1.96 -1.2 -0.45 -4.3
-1.45 -4.24 -4.81 - 1.48 1.78 -1.16 -4.1 -1.82 -1.8 -1.93 -3.28 -0.32 1.94 1.52 -0.32 -1.03 -1.51 -0.68 -1.97 -0.28 -1.04 0.83 1.51 0.65 -0.69 -0.42 0.99 -0.64 -0.46 -0.69
Bra017482 (RABA5a)
 0.34 0.99 -0.18 0.47 0.84 1.99 -0.49 - -1.12 -0.22 -0.72 -2.8 -0.06 0.43 0.43 -1.28 - -2.32 0.26 -0.42 -2.21 -3.91 -1.51 0.24 0.66 -0.84 0.55 0.08 0.83 -0.05 0.59
0.61 0.56 0.43 0.55 0.7 0.97 0.51 0.29 0.02 -0.54 0.12 -0.62 0.17 -0.16 -0.27 0.14 -0.25 -0.9 -0.28 0.03 -0.18 0.47 -1.21 -0.59 -0.54 -0.83 -0.42 -0.45 -0.39 -0.58 -0.25
Bra019031 (OMT1)
 - - - - 3.11 - - 2.03 - - - 2.06 3.82 - - - - - - - - - - - - - - - - - -
-0.17 -0.16 -0.46 -0.91 0.79 1.06 0.56 -0.62 0.12 -0.41 -0.46 -0.54 -0.02 0.35 0.65 0.3 -0.16 -0.06 0.23 0.39 0.3 -0.09 0.05 0.02 -0.3 -0.57 -0.13 -0.49 -0.36 -0.58 -0.81
Bra020164 (ATR7)
 1.29 -0.65 -0.07 0.5 1.46 1.66 0.1 -0.27 -0.14 -1.47 -0.62 -3.07 -0.56 0.86 -0.53 0.04 -0.64 -0.67 0.18 -0.43 -0.66 0.25 -0.45 -0.65 -0.2 0.22 -0.74 -0.58 -0.03 -1.19 -1.16
Bra021201 (ATIM)
 3.0 - - - 1.97 3.41 - - - - - - - - - - - - - - 2.05 - 2.1 - - - - - - - -
1.29 -0.18 -0.44 0.28 1.76 1.69 0.58 -0.35 0.01 -1.4 0.13 -1.31 -0.01 0.38 0.48 0.68 -0.46 -1.48 0.16 -0.05 -0.35 0.6 -0.99 -1.44 -1.85 -2.24 -1.08 -1.4 -1.01 -1.98 -2.1
0.59 -0.71 -0.22 0.56 1.53 1.7 -0.01 -0.62 0.29 -0.84 0.21 -1.89 -0.52 0.63 -0.16 0.57 -0.26 -1.04 0.15 -0.18 -0.39 0.1 -1.81 -0.76 -0.49 -0.5 -0.31 -0.25 -0.29 -0.96 -0.96
Bra022954 (SPL3)
 0.67 -0.65 -1.99 -1.49 1.58 1.4 -0.49 -1.4 0.15 -0.95 -0.26 -0.46 -3.41 0.53 0.7 0.24 -0.52 -5.17 0.09 -0.29 0.33 0.25 -2.9 0.73 0.5 0.24 0.23 0.38 0.0 -0.41 -1.93
- -1.77 - - 0.65 3.08 1.15 - - - - -1.94 -1.77 0.33 - 1.94 0.07 2.53 1.68 - - 1.33 - - - - - - -1.99 - -
Bra025082 (GPRP2)
 0.18 -0.29 -0.86 -0.79 0.54 0.59 -0.41 -1.7 0.52 -0.04 -0.02 -0.04 -1.09 0.17 0.7 0.28 -0.12 -0.41 0.64 -0.19 -0.04 0.1 -0.14 0.35 0.14 -0.04 0.12 0.45 0.14 -0.43 -1.33
Bra025410 (MYB121)
 - - - - 3.92 2.21 - - - - - - 3.49 - - - - - - - - - - - - - - - - - -
Bra025465 (DIP2)
 - - - 0.54 3.54 2.92 1.95 - - 1.69 0.66 - - - - - - - 0.8 - - - - - - - - - - - -
Bra026572 (PKS1)
 -0.05 -0.14 -0.25 -0.2 0.83 0.6 0.4 -0.07 0.1 -0.23 0.2 -0.27 -0.69 0.22 -0.04 -0.09 -0.21 -0.91 -0.36 -0.08 -0.12 -0.08 -1.28 0.0 0.21 0.26 0.13 0.27 0.43 -0.14 -0.11
Bra026816 (TWN2)
 1.03 0.35 0.56 0.19 2.19 2.37 0.75 -0.47 -1.24 -1.15 -1.18 -1.38 -0.47 -0.54 -0.15 -0.57 -0.68 -0.63 -1.01 -1.05 -1.14 -1.0 0.13 -1.04 -1.02 -0.99 -0.99 -0.94 -1.16 -1.09 -0.83
Bra027469 (ATH3)
 0.18 -0.47 -0.71 -0.74 0.78 0.58 -0.1 -0.95 0.18 0.19 -0.12 0.18 -0.96 0.24 0.47 0.07 0.13 0.42 0.28 -0.53 -0.01 -0.33 -0.02 0.11 -0.06 -0.21 -0.18 0.1 0.18 -0.03 -0.46
Bra027478 (SPL2)
 0.07 -0.49 -0.15 -0.9 1.25 0.81 -0.34 -0.93 0.16 -0.07 -0.06 -0.25 -0.99 0.56 0.52 -0.06 -0.13 -1.11 0.16 -0.08 0.03 0.11 -0.67 0.17 -0.1 -0.12 0.09 -0.13 0.45 -0.21 -0.39
Bra027837 (TH7)
 -1.54 -2.13 -3.08 -3.37 1.63 1.61 -1.55 -2.03 -0.57 -0.86 -0.8 -1.16 -1.15 1.38 0.79 -0.04 -1.04 -0.33 0.0 -0.9 0.41 -0.25 0.51 0.7 0.45 -0.01 0.28 0.81 0.26 -0.54 -2.15
Bra029281 (FYF)
 -0.15 -2.13 -1.35 -2.59 1.75 0.8 0.45 0.0 0.11 -0.27 -0.14 -0.14 -2.74 0.65 0.9 0.49 0.22 -2.32 0.47 0.07 -0.01 0.55 -0.96 0.06 0.0 -0.05 -0.05 -0.87 0.17 -0.7 -3.37
2.17 1.92 1.18 - 3.78 1.75 0.48 - - - - - - - - - - - - - - - 0.97 - - - - - - - -
Bra029940 (AGL21)
 - - - - 4.71 - - - - - - - - - - - - - - - - - - - - - - - 1.21 - 1.33
- 0.76 - - 3.47 2.36 - - - - - - - 2.09 2.18 0.65 - - - - 1.45 - - - - - - - - - -
Bra030239 (PII1)
 1.6 0.42 0.81 -1.55 1.74 2.65 0.47 -0.95 -2.77 -2.65 - -1.64 -1.41 0.22 -0.77 -2.32 1.03 - - -2.5 - -2.74 0.64 -1.15 0.21 0.66 -2.62 - 0.39 -0.44 -0.42
Bra031209 (RSM1)
 -0.54 -1.85 -1.03 -1.44 1.23 0.98 0.26 0.19 0.89 0.31 0.85 -0.2 -3.64 1.03 0.18 0.57 0.15 -0.36 0.29 0.63 0.48 0.56 - -1.41 -1.25 -0.9 -1.47 0.7 -0.07 -2.31 -7.46
Bra031688 (OPT2)
 1.7 - - - 3.32 3.42 -0.09 - - - - -0.37 - 0.86 - - - - - - - - 1.82 - - - - - - - -
Bra031742 (PIP5K7)
 0.18 -1.07 -1.66 -0.99 0.95 1.07 -0.63 -0.82 -0.08 -0.54 -0.18 -0.35 -0.84 0.41 0.35 0.07 -0.43 0.02 0.36 -0.07 -0.53 -0.42 -0.37 0.23 0.47 0.22 0.09 0.7 0.55 0.03 -0.48
Bra031945 (AGL57)
 0.02 -0.42 -0.23 0.19 1.26 1.15 -0.2 -1.28 0.77 0.19 -0.39 -0.26 -1.19 -0.15 -0.41 0.16 -0.35 -0.64 -0.47 -0.01 0.08 0.01 -1.9 0.59 0.12 -0.59 0.15 0.16 0.43 0.14 -1.83
Bra033161 (SAMDC)
 -0.19 - -0.73 1.43 - 3.36 - -0.17 - - - - - - 0.27 - - 2.28 - - - - - 2.19 0.75 -0.3 - 0.8 - -0.3 -
Bra033685 (J2)
 4.03 - - - - 3.87 - - - - - - - - - - - - - - - - - - - - - - - - -
Bra033810 (GSO2)
 0.69 -0.61 -0.64 0.49 1.39 1.7 -0.23 -0.73 0.63 -0.64 0.26 -3.16 -0.43 0.93 -0.16 0.86 0.15 -1.64 0.02 0.42 -0.58 0.68 -2.88 -0.75 -0.92 -1.31 -1.0 -0.76 -0.54 -0.81 -1.12
-1.3 -1.81 -3.0 -2.63 1.39 1.03 -0.04 -1.11 0.05 -0.11 -0.05 0.05 -1.05 1.12 1.2 0.13 0.01 -2.72 -0.2 -0.09 -0.01 0.55 -1.04 0.56 0.53 -1.78 -0.04 0.43 0.21 -0.24 -1.09
-0.19 -0.37 -0.66 -1.41 1.03 0.61 -0.99 -0.93 -0.43 -0.65 -0.34 -0.36 0.56 1.04 0.44 -0.33 -0.46 0.77 -0.05 -0.9 -0.34 -1.43 1.31 -0.06 -0.27 -0.31 -0.35 0.5 0.5 -0.68 -0.52
Bra037338 (GPAT8)
 -0.19 -0.35 0.32 0.01 0.96 0.78 -0.66 -0.38 0.78 0.43 0.44 0.48 -0.88 -0.59 -0.17 -0.22 -0.19 -1.33 -0.19 -0.11 -0.34 0.33 -2.7 0.04 -0.15 -0.25 0.02 0.47 0.34 -0.12 -0.67
Bra037614 (XTR8)
 -1.85 -4.22 -4.91 -4.67 1.88 0.22 -0.82 -2.23 -0.33 -0.79 -1.4 -1.16 0.75 0.96 0.65 -0.59 -1.0 0.45 0.06 -0.22 -1.18 -1.89 -0.17 0.62 0.65 0.79 0.39 1.26 0.79 -0.58 -0.74
- -0.35 - 1.69 1.68 2.35 -3.77 - -2.63 -4.05 -3.84 -4.28 0.1 -3.18 -0.98 -3.35 -1.23 - -6.21 - 0.54 - -0.2 1.27 1.15 0.59 0.42 0.55 1.12 0.29 0.48
- - - - 3.25 - - 3.35 - - - - 3.5 - - - - - - - - - - - - - - - - - -
Bra038775 (B160)
 -0.18 -0.4 -0.13 -0.71 0.5 0.14 -0.17 -0.04 0.0 -0.33 -0.14 -0.29 -0.02 0.52 0.37 -0.02 -0.13 0.15 -0.12 -0.1 -0.12 -0.31 0.76 0.18 -0.11 -0.24 -0.34 0.15 -0.01 0.01 0.16
0.53 -0.19 -0.15 0.3 0.87 1.08 0.04 -0.92 0.36 -0.84 0.08 -1.03 -0.36 0.59 0.28 0.15 -0.15 -0.45 0.24 0.02 0.04 0.14 -1.75 -0.19 -0.18 -0.3 -0.33 0.11 0.27 -0.57 -1.11
-0.08 -1.2 -2.84 -3.36 1.38 1.47 -0.68 -4.07 0.14 -0.32 -0.08 -0.14 -2.89 0.53 0.7 -0.17 -0.36 -1.34 0.53 -0.22 0.16 -0.21 -2.56 0.81 0.52 0.13 0.38 0.72 0.61 -0.27 -1.92
Bra039067 (MYB21)
 - - - - - 3.35 - - - 2.73 - - - - - - - 2.75 - 2.89 - - - - - - - - - - -
0.65 0.52 0.46 0.35 1.18 0.76 0.34 -0.78 -0.44 0.33 0.62 -1.2 -0.1 0.12 -0.72 0.8 -1.02 -0.55 0.32 0.45 0.29 0.93 -3.33 -0.89 -1.1 -1.54 -0.96 -0.44 -0.67 -0.66 -1.61
-0.62 -1.25 -0.63 -0.91 1.04 0.86 -0.24 -0.43 -0.18 -0.22 -0.0 -0.78 0.15 0.3 0.5 0.27 -0.03 -0.01 0.12 0.24 -0.2 -0.3 0.15 0.17 0.03 -0.25 -0.12 0.39 0.07 -0.16 -0.28
Bra039875 (VSR2)
 -0.84 -2.34 -1.04 -1.84 2.18 2.1 0.91 -0.76 - -0.91 -0.37 -0.71 - 1.49 -0.66 0.29 -0.65 -0.07 -1.4 - 0.33 - -1.34 0.18 -0.51 -0.9 0.16 0.46 1.02 -0.86 -0.87
Bra040855 (ATL15)
 1.07 - - - -0.25 2.6 - - 1.15 1.85 -0.37 -0.89 0.51 -1.16 0.61 -1.0 0.87 - -1.5 0.39 -0.37 - 0.35 - 0.81 - 0.9 - 0.86 - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.