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Heatmap: Cluster_188 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000393 (SOC1)
 0.0 0.15 0.0 0.38 6.29 1.64 0.06 0.0 0.05 0.04 0.04 0.06 0.12 0.02 0.05 0.0 0.0 0.09 0.0 0.0 0.0 0.02 0.12 0.0 0.0 0.08 0.02 0.02 0.02 0.0 0.0
Bra000425 (SINAL7)
 0.0 0.0 0.0 0.0 0.04 0.02 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra001325 (HY2)
 2.52 1.92 2.29 2.02 6.15 3.93 2.49 3.33 3.25 3.37 3.01 2.23 4.09 4.47 4.3 2.9 2.53 4.47 2.95 2.62 2.69 2.68 6.17 3.34 2.7 2.59 2.65 3.86 2.9 3.46 3.89
Bra001367 (LGO)
 5.0 5.25 3.41 1.32 30.8 10.65 7.73 5.38 6.97 9.21 6.47 8.3 3.41 9.47 13.52 5.79 5.5 6.03 8.39 5.9 6.51 7.63 8.33 8.42 10.68 2.41 6.43 12.31 7.49 9.71 4.36
Bra002004 (AMS)
 0.12 0.01 0.02 0.02 0.03 0.03 0.01 0.0 0.02 0.02 0.04 0.01 0.0 0.02 0.0 0.01 0.01 0.0 0.0 0.01 0.0 0.0 0.02 0.01 0.02 0.03 0.02 0.05 0.04 0.0 0.01
Bra002065 (ITN1)
 0.19 0.57 0.78 0.33 2.45 2.52 1.12 0.15 0.0 0.32 0.0 0.18 0.2 0.0 1.3 0.0 0.0 0.0 0.72 0.0 0.55 1.37 0.39 0.0 0.0 0.17 0.0 0.37 0.0 0.0 0.0
Bra004424 (ROXY9)
 46.47 9.53 4.86 8.56 159.38 195.08 33.39 9.42 133.37 52.89 83.14 49.41 0.93 157.42 96.89 47.05 63.2 13.66 100.35 67.85 73.54 69.5 1.79 70.65 37.63 27.69 33.58 185.54 149.71 60.61 21.07
Bra004928 (SOC1)
 1.18 0.31 0.12 0.31 33.15 11.92 0.26 0.11 0.67 0.38 0.91 0.26 0.62 6.3 5.32 0.57 0.54 6.85 4.78 0.6 0.59 0.69 1.37 0.58 0.72 0.82 0.5 1.61 0.98 0.12 0.27
Bra005510 (RLP27)
 0.02 0.0 0.01 0.01 0.05 0.02 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra005580 (VCC)
 2.73 1.1 1.34 0.88 11.58 4.01 1.31 1.61 1.75 2.87 2.49 2.28 5.62 6.92 7.5 3.31 2.58 4.83 2.46 1.84 1.16 2.73 7.8 4.42 4.0 2.08 3.59 7.61 3.16 3.89 1.67
Bra007933 (DYAD)
 0.3 0.0 0.0 0.0 1.35 0.65 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra007972 (XAL1)
 0.86 0.21 0.17 0.0 3.71 4.8 0.57 0.47 0.67 0.76 0.87 0.78 1.37 2.8 2.3 2.39 0.67 0.21 1.29 0.36 0.57 0.72 0.41 0.78 1.83 1.69 1.21 2.02 0.95 0.96 0.22
Bra009398 (BX3)
 0.93 0.71 1.01 0.65 1.99 1.84 1.13 1.32 0.99 1.19 1.33 1.27 1.61 1.84 2.2 1.27 1.16 1.24 1.46 1.35 1.41 1.46 1.64 1.53 1.28 1.26 1.31 1.89 1.41 1.24 1.36
Bra010066 (ACX4)
 0.16 0.0 0.04 0.0 0.04 0.34 0.04 0.0 0.0 0.05 0.0 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.3 0.16 0.0 0.0 0.0 0.0 0.0 0.0 0.04
0.09 0.01 0.05 0.07 0.24 0.24 0.05 0.22 0.18 0.2 0.18 0.16 0.13 0.33 0.21 0.19 0.12 0.04 0.11 0.19 0.11 0.1 0.06 0.01 0.0 0.0 0.08 0.05 0.11 0.02 0.01
Bra012271 (VTL1)
 1.45 0.72 0.13 0.29 3.84 0.46 0.34 0.27 0.84 0.86 1.05 0.84 4.81 0.27 2.31 0.85 1.32 1.94 0.59 0.26 0.95 0.27 2.62 1.33 1.81 3.21 0.81 2.72 1.47 1.52 0.12
7.15 0.71 0.65 0.74 24.17 22.58 0.0 1.45 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra014952 (CAS1)
 0.77 0.34 0.88 0.39 4.54 1.99 1.4 1.04 1.51 1.45 1.61 1.75 0.54 2.78 2.49 1.37 1.21 1.18 1.64 1.78 1.1 1.89 3.07 1.98 2.27 1.86 1.8 2.26 2.0 1.46 1.25
Bra015326 (BDL)
 4.46 2.77 3.57 2.91 14.3 12.35 1.97 1.97 1.69 1.65 2.82 1.8 3.85 6.88 9.55 3.58 2.03 5.59 3.85 1.19 1.64 1.23 2.5 2.34 1.54 4.0 1.23 2.2 1.66 1.44 1.68
Bra015546 (LAX2)
 0.15 0.4 0.0 0.33 0.42 1.01 0.35 0.0 0.01 0.0 0.0 0.0 0.04 0.04 0.0 0.0 0.02 0.04 0.02 0.0 0.0 0.0 0.44 0.18 0.1 0.02 0.1 0.08 0.26 0.11 0.35
Bra015784 (AMY2)
 105.16 49.62 27.14 53.84 162.89 195.65 54.83 39.47 72.36 65.02 66.93 67.8 36.27 120.71 139.92 82.65 55.06 18.15 52.47 49.34 93.34 71.05 40.81 90.98 82.18 69.4 80.32 119.43 76.58 52.75 41.41
Bra016025 (PS2)
 4.91 0.81 0.2 1.88 45.68 46.52 8.69 9.95 19.31 11.98 20.19 15.64 15.69 24.22 47.26 21.3 12.66 23.88 43.35 18.98 16.45 15.6 9.28 35.25 29.15 19.14 23.73 40.34 24.28 10.16 10.09
2.3 1.32 2.07 1.41 11.52 11.7 3.67 1.91 3.27 2.85 4.01 3.88 2.48 6.65 6.13 3.72 2.78 3.23 5.44 4.52 4.42 3.92 4.48 5.39 5.22 3.09 2.94 3.1 4.33 1.97 2.23
Bra016556 (TET11)
 0.0 0.02 0.0 0.0 0.03 0.08 0.0 0.0 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.05 0.0 0.0 0.0 0.0 0.0 0.0
0.23 0.69 0.66 0.41 4.23 3.75 1.52 0.82 2.13 1.88 1.32 0.87 1.06 3.87 1.8 1.41 0.99 0.78 2.11 1.28 1.04 1.33 1.78 0.27 0.52 0.48 0.14 0.32 0.55 0.92 0.06
1.02 0.15 0.1 0.0 7.82 9.6 1.25 0.16 0.79 0.8 0.73 0.29 2.24 10.74 8.03 2.25 1.37 0.98 1.74 0.72 2.3 1.36 4.99 7.98 4.39 1.73 2.09 5.56 1.8 2.04 1.73
Bra017482 (RABA5a)
 0.33 0.53 0.23 0.37 0.47 1.05 0.19 0.0 0.12 0.23 0.16 0.04 0.25 0.36 0.36 0.11 0.0 0.05 0.32 0.2 0.06 0.02 0.09 0.31 0.42 0.15 0.39 0.28 0.47 0.26 0.4
144.18 138.84 126.96 138.34 153.05 184.68 134.88 115.28 96.14 65.11 102.66 61.35 106.43 84.31 78.59 103.91 79.36 50.67 77.67 96.2 83.53 130.71 40.89 62.78 65.06 53.05 70.65 69.1 72.07 63.04 79.68
Bra019031 (OMT1)
 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.01 0.0 0.0 0.0 0.01 0.03 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
13.54 13.63 11.04 8.09 26.36 31.77 22.49 9.89 16.6 11.43 11.04 10.46 15.0 19.45 23.86 18.77 13.6 14.61 17.82 19.93 18.74 14.34 15.73 15.45 12.38 10.24 13.95 10.86 11.9 10.17 8.7
Bra020164 (ATR7)
 6.42 1.68 2.5 3.71 7.22 8.33 2.83 2.18 2.39 0.95 1.71 0.31 1.79 4.77 1.82 2.7 1.69 1.65 2.97 1.95 1.66 3.12 1.93 1.67 2.29 3.05 1.58 1.76 2.57 1.15 1.18
Bra021201 (ATIM)
 0.3 0.0 0.0 0.0 0.15 0.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.15 0.0 0.16 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
7.6 2.74 2.28 3.75 10.5 9.97 4.63 2.42 3.12 1.17 3.4 1.25 3.07 4.02 4.31 4.96 2.26 1.11 3.47 2.99 2.43 4.68 1.56 1.14 0.86 0.66 1.46 1.18 1.53 0.79 0.72
5.23 2.12 2.97 5.11 10.02 11.29 3.44 2.25 4.23 1.94 4.0 0.94 2.42 5.37 3.11 5.16 2.91 1.68 3.84 3.06 2.64 3.71 0.99 2.05 2.46 2.45 2.8 2.93 2.83 1.79 1.78
Bra022954 (SPL3)
 72.63 29.22 11.51 16.27 136.78 120.47 32.61 17.38 50.89 23.76 38.21 33.31 4.3 65.9 74.19 53.98 31.99 1.27 48.63 37.54 57.55 54.59 6.15 76.1 64.64 53.9 53.75 59.77 45.81 34.42 12.06
0.0 0.06 0.0 0.0 0.29 1.59 0.42 0.0 0.0 0.0 0.0 0.05 0.06 0.24 0.0 0.72 0.2 1.09 0.6 0.0 0.0 0.47 0.0 0.0 0.0 0.0 0.0 0.0 0.05 0.0 0.0
Bra025082 (GPRP2)
 837.3 603.84 408.25 427.37 1073.08 1113.65 556.81 227.99 1057.73 716.89 731.55 721.1 347.33 832.75 1199.43 897.92 680.37 555.45 1150.57 647.34 720.12 791.09 670.04 943.97 813.28 721.58 804.11 1013.61 814.71 549.2 295.11
Bra025410 (MYB121)
 0.0 0.0 0.0 0.0 0.04 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.03 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra025465 (DIP2)
 0.0 0.0 0.0 0.03 0.26 0.17 0.09 0.0 0.0 0.07 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra026572 (PKS1)
 6.92 6.48 6.02 6.25 12.74 10.87 9.44 6.84 7.69 6.11 8.24 5.92 4.45 8.32 6.95 6.73 6.21 3.8 5.58 6.78 6.6 6.76 2.95 7.17 8.29 8.59 7.86 8.65 9.68 6.51 6.65
Bra026816 (TWN2)
 30.76 19.19 22.23 17.15 68.68 77.75 25.36 10.93 6.39 6.8 6.66 5.79 10.89 10.35 13.62 10.13 9.41 9.73 7.51 7.31 6.84 7.53 16.54 7.35 7.46 7.61 7.6 7.86 6.76 7.08 8.48
Bra027469 (ATH3)
 2427.85 1549.25 1310.86 1285.26 3681.02 3209.9 2004.91 1106.56 2422.9 2448.41 1971.56 2425.79 1101.84 2524.97 2964.5 2255.12 2340.06 2862.17 2604.41 1480.65 2134.42 1709.63 2120.28 2310.09 2050.12 1851.94 1891.69 2295.26 2422.94 2102.29 1553.75
Bra027478 (SPL2)
 4.66 3.15 3.99 2.38 10.51 7.78 3.49 2.32 4.96 4.21 4.24 3.73 2.23 6.53 6.33 4.26 4.06 2.05 4.96 4.19 4.52 4.79 2.79 4.99 4.15 4.08 4.72 4.06 6.04 3.82 3.39
Bra027837 (TH7)
 7.64 5.08 2.62 2.15 68.47 67.62 7.55 5.44 14.95 12.25 12.71 9.92 9.99 57.78 38.43 21.57 10.8 17.66 22.18 11.87 29.5 18.63 31.61 36.14 30.23 22.01 26.95 38.91 26.5 15.21 4.99
Bra029281 (FYF)
 23.05 5.83 9.99 4.25 85.8 44.38 34.8 25.54 27.52 21.12 23.18 23.13 3.82 40.03 47.51 35.96 29.72 5.09 35.46 26.71 25.34 37.37 13.1 26.59 25.54 24.7 24.68 13.99 28.66 15.68 2.47
0.28 0.23 0.14 0.0 0.85 0.21 0.09 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.12 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra029940 (AGL21)
 0.0 0.0 0.0 0.0 3.1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.27 0.0 0.3
0.0 0.01 0.0 0.0 0.09 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.03 0.04 0.01 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra030239 (PII1)
 0.1 0.05 0.06 0.01 0.11 0.21 0.05 0.02 0.01 0.01 0.0 0.01 0.01 0.04 0.02 0.01 0.07 0.0 0.0 0.01 0.0 0.01 0.05 0.02 0.04 0.05 0.01 0.0 0.04 0.03 0.03
Bra031209 (RSM1)
 78.67 31.65 56.02 42.06 267.17 225.61 136.51 129.81 210.58 141.3 205.99 99.0 9.16 232.38 129.11 169.36 126.6 89.07 139.02 176.4 159.16 168.27 0.0 43.03 47.93 61.21 41.19 185.81 108.83 23.04 0.65
Bra031688 (OPT2)
 0.01 0.0 0.0 0.0 0.04 0.05 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra031742 (PIP5K7)
 1.78 0.75 0.5 0.79 3.04 3.31 1.01 0.89 1.49 1.08 1.39 1.24 0.88 2.09 2.0 1.66 1.17 1.6 2.03 1.5 1.09 1.18 1.22 1.84 2.18 1.84 1.67 2.55 2.3 1.61 1.13
Bra031945 (AGL57)
 3.6 2.66 3.04 4.06 8.55 7.92 3.11 1.47 6.1 4.07 2.71 2.98 1.56 3.22 2.69 3.99 2.79 2.28 2.57 3.53 3.78 3.59 0.95 5.36 3.88 2.37 3.95 3.99 4.81 3.93 1.0
Bra033161 (SAMDC)
 0.09 0.0 0.06 0.28 0.0 1.06 0.0 0.09 0.0 0.0 0.0 0.0 0.0 0.0 0.12 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.0 0.47 0.17 0.08 0.0 0.18 0.0 0.08 0.0
Bra033685 (J2)
 0.08 0.0 0.0 0.0 0.0 0.08 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra033810 (GSO2)
 7.13 2.91 2.85 6.24 11.58 14.36 3.78 2.68 6.84 2.84 5.29 0.49 3.28 8.44 3.97 8.03 4.9 1.43 4.49 5.94 2.97 7.12 0.6 2.63 2.35 1.79 2.22 2.61 3.05 2.52 2.04
3.07 2.16 0.95 1.22 19.81 15.41 7.37 3.5 7.84 7.01 7.32 7.85 3.64 16.42 17.36 8.26 7.61 1.14 6.59 7.08 7.49 11.07 3.67 11.12 10.94 2.2 7.35 10.17 8.77 6.4 3.56
1.55 1.36 1.11 0.66 3.59 2.69 0.88 0.92 1.31 1.12 1.39 1.38 2.6 3.62 2.39 1.4 1.28 3.0 1.7 0.94 1.39 0.65 4.37 1.68 1.46 1.42 1.38 2.48 2.48 1.1 1.22
Bra037338 (GPAT8)
 11.23 10.05 15.98 12.9 24.99 22.01 8.11 9.89 22.11 17.26 17.45 17.91 6.97 8.54 11.39 10.99 11.26 5.1 11.23 11.88 10.12 16.19 1.98 13.23 11.59 10.77 13.04 17.79 16.21 11.85 8.09
Bra037614 (XTR8)
 0.76 0.15 0.09 0.11 10.05 3.17 1.55 0.58 2.17 1.58 1.04 1.22 4.58 5.32 4.28 1.81 1.37 3.73 2.84 2.34 1.2 0.74 2.42 4.21 4.28 4.74 3.58 6.55 4.72 1.82 1.64
0.0 5.6 0.0 23.05 22.95 36.36 0.52 0.0 1.16 0.43 0.5 0.37 7.67 0.79 3.62 0.7 3.05 0.0 0.1 0.0 10.39 0.0 6.21 17.25 15.85 10.73 9.55 10.47 15.58 8.76 10.0
0.0 0.0 0.0 0.0 0.05 0.0 0.0 0.05 0.0 0.0 0.0 0.0 0.06 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra038775 (B160)
 1.44 1.23 1.48 1.0 2.3 1.8 1.44 1.58 1.63 1.29 1.47 1.33 1.61 2.34 2.11 1.6 1.48 1.8 1.5 1.52 1.5 1.31 2.75 1.84 1.51 1.38 1.28 1.81 1.62 1.63 1.82
4.35 2.63 2.7 3.7 5.49 6.36 3.08 1.59 3.85 1.68 3.18 1.47 2.35 4.52 3.64 3.34 2.7 2.2 3.54 3.04 3.08 3.32 0.89 2.63 2.65 2.44 2.39 3.23 3.62 2.03 1.39
534.06 246.27 79.34 54.98 1477.14 1569.67 352.71 33.78 621.92 453.53 537.16 512.08 76.22 818.83 920.6 504.3 439.99 224.42 816.25 485.49 633.82 490.07 95.79 989.31 814.25 618.46 738.08 933.2 863.76 468.03 149.26
Bra039067 (MYB21)
 0.0 0.0 0.0 0.0 0.0 0.05 0.0 0.0 0.0 0.03 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.03 0.0 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
1.83 1.67 1.6 1.49 2.63 1.98 1.48 0.68 0.86 1.47 1.79 0.51 1.09 1.26 0.71 2.03 0.57 0.8 1.45 1.59 1.43 2.22 0.12 0.63 0.54 0.4 0.6 0.86 0.73 0.74 0.38
2.29 1.47 2.27 1.86 7.21 6.35 2.96 2.6 3.11 3.0 3.5 2.05 3.88 4.32 4.97 4.23 3.43 3.48 3.82 4.13 3.05 2.86 3.9 3.95 3.59 2.96 3.24 4.6 3.67 3.13 2.89
Bra039875 (VSR2)
 2.53 0.9 2.2 1.27 20.58 19.47 8.51 2.67 0.0 2.41 3.5 2.78 0.0 12.7 2.87 5.53 2.89 4.31 1.72 0.0 5.68 0.0 1.79 5.12 3.17 2.42 5.04 6.21 9.19 2.49 2.48
Bra040855 (ATL15)
 0.04 0.0 0.0 0.0 0.02 0.13 0.0 0.0 0.05 0.08 0.02 0.01 0.03 0.01 0.03 0.01 0.04 0.0 0.01 0.03 0.02 0.0 0.03 0.0 0.04 0.0 0.04 0.0 0.04 0.0 0.0

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)