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Heatmap: Cluster_254 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

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(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
3.11 4.4 4.33 2.15 6.95 4.67 2.65 4.02 3.87 3.45 3.06 2.71 3.82 6.08 7.93 3.85 4.66 10.95 3.56 2.24 3.53 2.49 5.8 3.78 2.71 3.28 4.33 3.45 2.95 4.54 3.39
Bra000807 (PDF2)
 5.57 6.99 8.06 7.46 10.17 7.71 5.81 4.9 7.99 7.01 7.1 6.02 5.52 11.44 9.53 8.23 6.71 8.88 7.43 7.24 5.87 6.07 4.72 9.35 8.02 8.62 7.82 8.72 9.78 7.02 7.13
Bra000962 (BSK3)
 4.02 3.7 3.34 2.5 7.9 7.27 4.05 3.85 5.49 4.57 5.44 4.95 4.48 8.47 8.38 6.1 6.63 14.0 8.19 6.15 5.63 5.31 5.34 6.42 6.26 5.35 5.73 7.03 6.57 5.34 6.24
Bra001038 (RRT2)
 1.27 0.88 0.88 1.64 7.4 9.11 6.73 4.48 6.65 5.74 5.35 6.14 6.03 13.33 9.94 9.0 7.91 23.71 13.9 7.71 5.35 6.14 2.88 7.25 7.22 5.01 6.64 8.34 7.08 5.58 6.46
Bra003021 (UF3GT)
 0.0 0.0 0.0 0.0 0.58 2.07 0.15 0.01 0.66 0.04 0.0 0.16 2.1 10.68 8.66 0.07 0.0 21.7 1.24 0.23 0.0 0.15 0.0 0.0 0.0 0.0 0.0 0.0 0.04 0.01 0.0
Bra003126 (PAL2)
 0.69 0.63 1.07 1.68 1.23 1.8 2.56 1.7 0.72 1.01 0.81 0.68 1.58 2.16 2.26 1.76 1.58 6.7 3.2 1.85 1.64 1.31 2.57 0.89 0.82 0.8 0.83 0.81 0.73 0.5 0.51
Bra003209 (CHI)
 2.78 1.26 1.97 2.08 10.07 13.2 20.47 10.62 5.6 7.49 7.86 4.92 17.33 29.51 24.42 23.6 14.62 44.98 30.74 18.99 13.94 13.31 10.27 12.09 10.31 7.05 9.05 10.65 7.88 6.08 5.78
0.72 0.08 0.19 0.57 3.3 4.48 1.3 0.68 2.56 1.65 1.29 1.82 1.83 7.45 6.24 2.55 3.0 9.03 4.8 2.74 3.05 1.54 1.63 4.39 3.72 3.17 2.79 4.19 4.63 1.43 2.22
Bra005370 (KUP11)
 5.38 5.28 5.76 6.53 9.85 14.25 14.94 11.27 10.86 11.57 9.69 10.87 16.95 15.13 15.33 13.2 14.06 30.61 23.49 15.06 9.85 12.37 8.04 14.49 14.2 10.67 14.1 14.77 18.62 11.32 14.1
Bra006118 (NDL2)
 7.64 9.34 6.94 17.39 34.97 29.87 28.35 27.59 25.48 26.4 23.48 22.47 19.25 41.02 43.08 34.97 30.1 69.5 31.37 27.58 21.97 21.39 7.62 21.52 21.01 19.84 18.11 22.09 20.72 13.42 12.9
Bra006224 (CHS)
 0.07 0.05 0.0 0.67 7.61 10.02 15.75 2.6 1.36 3.21 2.51 1.15 11.39 20.19 14.91 22.29 14.86 64.25 21.59 15.6 9.17 6.83 4.52 6.19 5.05 3.41 2.83 11.06 2.6 0.51 0.25
Bra006361 (PIN5)
 0.0 0.0 0.0 0.01 0.03 0.05 0.06 0.06 0.13 0.07 0.06 0.0 0.06 0.25 0.23 0.08 0.19 0.6 0.05 0.14 0.2 0.13 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
2.0 1.2 0.94 1.63 6.18 11.57 18.39 13.85 7.61 9.07 9.44 7.64 17.29 17.97 16.95 16.55 11.83 33.16 21.25 13.4 15.47 11.44 26.04 15.67 11.24 14.02 15.18 8.02 9.77 4.66 11.01
42.6 39.0 34.09 32.53 46.25 51.02 57.2 53.71 30.81 38.11 31.27 33.31 61.16 54.77 50.99 45.81 49.25 92.64 66.64 44.33 40.95 47.07 33.87 48.74 49.24 35.79 47.86 50.97 38.98 32.25 43.17
Bra007744 (ASAT1)
 1.27 0.42 0.13 0.14 1.78 1.39 0.68 0.44 1.9 0.7 1.28 1.14 1.72 3.12 3.04 1.29 0.7 3.51 1.67 1.0 1.27 1.23 1.72 2.54 2.21 1.2 1.79 2.38 2.59 0.9 1.47
Bra008421 (PGK)
 30.55 28.09 20.74 31.33 61.07 62.59 79.64 65.19 38.79 66.78 56.04 54.95 80.62 63.25 83.16 97.65 103.27 182.15 112.05 86.97 76.13 80.23 112.61 72.44 75.18 59.36 80.14 51.87 39.01 44.48 60.12
Bra010189 (GBSS1)
 218.52 140.76 99.18 152.96 332.87 594.49 334.1 204.8 331.19 268.37 285.22 269.04 198.43 729.12 671.72 357.17 332.47 601.55 748.24 345.02 354.24 299.54 90.39 340.24 334.35 277.68 298.93 399.52 400.22 215.94 270.22
Bra010960 (PUB6)
 3.19 1.88 2.02 3.18 9.23 12.86 7.72 4.91 8.56 6.8 8.14 5.9 5.58 18.59 17.78 10.55 8.14 14.56 12.94 9.71 7.94 7.03 4.03 8.23 8.36 6.83 8.73 8.9 9.85 5.17 7.82
Bra011841 (MIC60)
 0.05 0.22 0.32 0.18 0.7 0.85 0.32 0.76 0.96 0.62 0.81 0.98 1.0 2.23 2.12 0.62 0.67 2.0 0.62 1.0 0.23 1.42 0.6 0.32 0.14 0.03 0.21 0.04 0.21 0.14 0.11
0.03 0.0 0.0 0.0 0.0 0.09 0.02 0.29 0.0 0.22 0.05 0.08 0.18 0.5 0.51 0.03 0.0 0.23 0.08 0.24 0.0 0.03 0.0 0.0 0.03 0.0 0.03 0.0 0.0 0.0 0.0
Bra013009 (GSM1)
 6.92 1.41 0.9 1.42 29.94 45.46 9.0 5.81 85.35 37.83 51.64 42.64 27.23 76.56 113.03 48.12 25.76 105.59 79.56 62.81 46.41 46.63 53.14 73.22 76.69 50.66 56.79 92.29 96.65 33.1 46.22
Bra013265 (AGD8)
 1.43 1.41 1.16 1.13 2.88 2.98 3.35 3.14 2.75 3.86 2.53 2.39 6.51 5.0 5.44 5.02 4.89 10.44 5.16 2.95 3.42 3.23 2.21 2.25 2.08 1.43 2.23 1.88 1.37 1.2 1.48
Bra015976 (SIS8)
 9.9 10.16 12.17 8.27 15.47 27.66 17.49 13.46 13.86 15.77 18.22 13.1 15.89 31.21 27.58 23.1 23.25 46.58 24.68 24.76 21.46 21.28 18.69 11.97 13.51 11.45 12.21 11.24 14.64 7.35 11.25
Bra016081 (CEPR2)
 6.37 5.14 5.68 5.56 18.06 14.38 4.57 6.04 7.07 6.15 5.58 6.14 7.56 15.81 20.31 7.67 5.97 31.89 16.14 11.42 8.94 9.62 6.19 12.57 11.63 14.26 10.63 10.49 12.11 11.12 11.13
16.05 8.26 8.66 17.81 28.65 25.71 17.31 12.94 21.71 18.36 19.02 17.19 17.23 31.56 28.04 22.2 21.93 76.62 65.86 22.47 15.72 18.7 13.61 16.3 13.89 26.99 13.84 15.59 15.7 11.98 11.06
Bra017788 (ELO4)
 0.09 0.22 0.19 0.02 1.59 1.59 0.45 0.48 1.24 0.87 0.8 0.83 0.59 3.95 4.02 1.99 1.46 5.51 3.13 1.4 1.59 1.12 0.31 1.85 0.94 0.88 1.33 2.4 2.19 0.75 0.6
1.29 1.74 1.21 1.16 4.41 4.44 1.4 1.91 1.02 1.02 1.87 2.09 2.2 4.97 4.63 1.16 0.86 5.87 1.96 1.83 1.34 1.83 1.39 1.79 0.67 0.95 0.95 1.41 1.45 0.94 0.87
2.5 3.21 3.53 3.9 17.39 9.3 5.17 3.87 9.66 9.97 7.0 6.94 5.47 24.46 25.03 8.53 5.85 26.69 7.69 9.91 5.3 6.51 1.74 3.18 2.84 5.46 5.77 5.16 6.08 3.39 3.41
Bra020782 (PRXIIF)
 58.87 66.07 51.29 49.73 85.71 70.66 50.61 46.43 67.06 63.4 62.96 66.62 76.56 98.69 98.65 77.87 61.62 109.56 83.3 68.32 67.08 73.75 71.36 88.92 83.95 74.68 87.44 74.0 79.61 79.84 88.57
Bra021354 (ATL51)
 2.06 1.6 2.56 1.82 4.56 5.76 3.4 2.54 3.33 2.83 2.8 3.34 2.39 5.02 5.28 4.51 3.83 14.45 6.43 4.46 3.55 4.31 1.41 3.07 2.88 2.54 2.05 2.27 2.81 2.37 1.94
0.84 0.77 0.75 1.24 15.9 20.84 18.03 13.43 17.97 17.14 14.11 15.07 13.98 29.38 29.48 22.51 25.45 67.56 39.37 20.15 18.8 16.0 9.82 26.2 23.72 10.26 18.48 20.32 16.76 10.78 7.4
Bra022816 (ERD13)
 28.43 37.02 58.11 33.27 204.97 94.95 102.54 84.76 63.15 91.5 60.01 63.76 64.6 130.49 76.85 131.61 128.68 525.31 179.3 80.8 93.29 140.31 80.3 70.4 71.19 55.7 63.97 80.83 64.49 40.19 21.92
Bra023084 (MAT3)
 9.36 9.19 9.46 10.26 33.96 50.36 33.51 44.14 19.51 20.23 19.76 20.1 42.81 56.8 54.21 42.88 35.82 89.77 35.78 30.51 26.35 25.67 44.48 29.99 28.77 21.82 26.1 28.86 31.93 27.29 30.41
Bra023594 (UGT78D2)
 12.63 15.02 15.76 18.6 21.7 27.34 29.81 22.85 16.61 19.53 16.37 17.14 23.17 37.06 31.17 38.79 28.47 50.13 26.89 36.18 27.3 27.04 11.54 19.95 21.46 15.9 19.83 20.55 16.68 13.62 16.27
Bra023602 (TT19)
 0.15 0.13 0.14 1.4 15.55 17.63 22.45 9.11 5.54 8.44 5.77 4.63 23.31 55.33 33.66 28.08 26.58 89.45 21.37 14.15 14.22 11.51 6.79 10.69 8.46 3.82 5.5 15.17 6.45 2.66 5.17
Bra023893 (MRP6)
 0.15 0.08 0.08 0.09 0.63 0.13 0.24 0.32 0.26 0.24 0.13 0.27 0.48 0.69 0.5 0.25 0.16 1.06 0.34 0.16 0.2 0.22 0.07 0.12 0.19 0.12 0.15 0.3 0.36 0.23 0.13
Bra024265 (XYP1)
 20.8 24.78 21.18 28.77 71.59 73.31 90.84 75.76 67.11 91.17 85.42 79.81 112.42 118.92 136.96 151.91 128.49 165.83 134.84 104.65 101.33 99.55 171.93 104.0 99.46 83.69 90.81 63.11 51.43 53.63 74.84
Bra024285 (NPH3)
 1.64 0.85 2.1 1.02 6.37 4.43 3.34 3.36 5.21 4.19 5.08 4.34 5.43 6.95 6.1 4.0 3.64 7.37 5.85 4.28 4.21 3.86 4.19 5.48 5.21 3.81 4.28 5.73 5.17 4.16 3.89
Bra024568 (PGM3)
 24.95 24.34 18.03 25.12 48.26 52.64 46.89 46.09 38.6 50.12 38.81 38.38 49.51 58.06 60.31 53.33 60.18 114.03 79.6 56.46 52.32 51.29 54.51 40.21 42.64 38.24 42.46 39.06 31.71 31.92 40.34
4.15 4.94 1.55 6.31 25.97 63.96 22.97 20.66 27.62 15.37 15.22 17.33 33.18 48.8 39.58 30.05 24.33 78.73 54.95 26.73 20.29 19.43 24.7 52.52 42.38 12.62 33.58 38.01 41.39 12.16 29.76
Bra025288 (ATPK7)
 0.18 0.2 0.22 0.27 2.24 2.34 1.66 1.53 2.3 1.22 1.69 1.9 1.66 4.1 2.47 1.96 1.48 7.12 3.42 2.28 1.5 1.26 1.77 3.22 2.77 1.27 2.21 2.36 3.21 1.72 2.42
Bra026773 (MBD10)
 7.41 4.94 6.24 6.36 17.02 19.9 10.19 8.19 17.92 10.45 11.25 9.59 15.29 23.66 25.37 23.39 13.91 53.84 41.8 18.29 10.71 11.77 5.6 10.06 10.52 10.89 7.71 7.73 12.42 8.47 12.47
Bra029482 (MEE51)
 3.33 8.79 4.53 4.13 7.69 19.1 16.36 10.25 10.48 16.3 14.7 18.6 13.98 16.59 23.07 17.95 24.26 62.64 50.59 15.94 10.2 19.83 16.25 18.18 18.35 15.36 18.25 20.79 21.46 22.03 28.92
Bra029836 (CPY)
 1.47 0.84 1.2 1.0 1.81 1.86 1.0 0.77 1.46 1.27 1.41 1.17 1.1 2.37 2.82 1.56 0.96 6.16 2.08 1.17 1.04 1.04 0.49 1.67 2.02 1.45 1.61 2.13 1.76 1.53 1.65
Bra029875 (MES17)
 0.42 0.16 0.44 0.04 1.24 1.02 0.52 0.24 1.2 0.86 0.81 0.71 1.23 2.69 2.97 1.47 0.5 3.04 2.27 0.73 1.4 0.84 1.71 2.04 1.62 1.54 1.03 1.7 1.77 0.53 1.1
Bra030461 (GA2OX7)
 0.38 0.65 0.8 0.54 2.51 1.85 1.01 1.05 1.44 1.3 1.08 1.03 1.32 3.06 3.17 1.51 0.73 4.64 1.6 1.79 1.0 1.06 0.46 0.58 0.6 0.76 0.75 0.91 0.93 0.54 0.72
Bra032651 (KEA1)
 7.43 5.68 5.49 7.29 10.94 12.04 12.15 11.35 9.02 10.14 9.89 10.2 11.44 14.22 13.67 13.31 11.75 22.0 15.5 11.85 9.44 10.51 12.96 8.85 9.36 9.58 9.84 10.91 11.97 9.33 10.06
Bra033574 (ROC1)
 384.89 288.24 70.5 98.56 636.76 685.31 414.43 375.0 608.65 320.97 453.93 394.51 314.5 734.66 850.23 432.9 392.27 1592.31 831.97 466.85 518.6 395.03 48.91 638.97 601.35 535.71 577.98 722.11 804.7 538.41 412.62
5.31 5.77 5.48 5.37 11.2 10.88 8.73 11.87 8.68 9.08 8.7 7.71 11.3 13.95 15.51 16.24 10.36 30.23 12.26 10.82 9.37 11.02 9.51 5.03 4.88 5.29 4.58 5.81 4.55 4.0 7.39
0.01 0.01 0.01 0.01 0.15 0.11 0.0 0.02 0.01 0.0 0.0 0.07 0.05 0.16 0.15 0.04 0.09 0.14 0.06 0.02 0.01 0.02 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0
Bra036262 (XT2)
 11.94 14.47 11.18 10.07 17.44 14.25 8.82 10.17 14.02 13.01 12.33 12.63 10.29 20.97 22.51 14.62 11.73 24.16 16.65 14.07 12.46 13.3 8.19 17.85 19.16 15.46 18.05 21.15 22.26 14.49 11.4
2.79 2.27 3.69 1.94 9.02 8.63 8.7 7.22 7.48 7.72 8.07 7.28 14.65 9.68 10.72 13.58 8.42 25.69 12.64 10.61 8.7 9.65 8.88 7.5 8.49 3.0 7.76 5.33 7.4 7.25 11.99
0.94 0.34 0.56 0.6 2.14 1.4 2.02 1.85 2.45 2.38 2.15 1.81 1.97 4.01 3.16 3.06 2.23 8.2 4.29 2.39 2.63 2.73 1.69 2.28 2.5 1.77 2.0 2.14 1.91 1.14 1.21
Bra037903 (PBL17)
 11.37 11.51 13.5 9.35 16.55 17.23 14.06 14.43 20.09 14.32 15.4 15.76 13.84 28.46 26.54 20.87 16.11 56.44 33.71 20.0 17.82 22.71 11.46 19.96 19.62 10.64 18.8 15.95 19.7 17.07 16.28
15.05 11.59 9.92 8.37 32.54 30.39 19.04 17.66 25.33 20.48 17.81 19.83 22.28 28.98 35.55 21.14 22.93 37.23 27.91 21.94 23.24 23.7 20.46 25.64 25.06 20.04 21.7 23.44 24.33 19.22 23.35
Bra039362 (CHI)
 2.68 4.76 2.14 3.65 22.68 16.01 30.02 15.65 7.06 8.72 8.66 4.41 24.0 34.61 26.39 29.72 18.26 60.98 40.97 25.53 20.24 13.46 11.13 17.21 16.0 11.15 11.73 18.11 16.25 10.24 12.99
Bra039936 (scpl10)
 10.28 9.43 14.95 24.78 12.94 17.53 35.71 16.02 8.33 8.56 9.96 7.41 21.2 31.88 19.11 26.54 19.66 86.6 17.48 14.77 15.89 11.84 7.72 10.21 9.79 11.43 9.32 12.91 7.45 4.66 7.42
Bra040512 (VMA10)
 70.97 72.47 73.51 68.58 117.87 81.54 129.4 121.98 91.6 92.02 143.36 95.55 119.7 227.17 229.29 158.93 134.45 308.79 129.81 101.35 99.95 110.72 62.5 64.92 60.5 61.63 68.73 70.86 67.64 51.36 65.83
Bra041166 (CASPL3A2)
 10.84 11.34 13.53 9.29 25.28 19.38 7.26 4.6 23.39 16.41 17.87 16.25 6.54 32.15 27.73 15.45 12.94 27.93 25.97 16.9 14.87 18.67 7.89 15.07 19.6 19.21 23.87 17.8 19.5 13.91 8.85

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)