Heatmap: Cluster_63 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or zlog-transformed)

View using InCHLib : here ( Experimental feature, still under development)

(Values are normalized against highest expression of the row)

Gene	Light: 260 uE m-2 s-1	Light: 195 uE m-2 s-1	Light: 130 uE m-2 s-1 (Control)	Light: 65 uE m-2 s-1	Photoperiod: L24	Photoperiod: L18D6	Photoperiod: L13D11 (Control)	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C (Control)	Temperature: 25°C	Temperature: 30°C
Spov3_C0002.00060 (TIF3H1)	0.6	0.63	0.7	0.95	0.56	0.63	0.66	0.99	0.58	0.56	0.67	0.64	0.84	0.67	0.86	0.85	0.9	0.55	0.62	0.61	0.7	0.67	1.0	0.65	0.7	0.67	0.75	0.64	0.53	0.62
Spov3_C0002.00084	0.56	0.59	0.62	1.0	0.47	0.53	0.43	0.84	0.41	0.42	0.48	0.47	0.61	0.4	0.78	0.75	0.85	0.38	0.43	0.45	0.53	0.53	0.65	0.38	0.48	0.53	0.57	0.54	0.47	0.69
Spov3_C0002.00117 (UBA2A)	0.73	0.76	0.72	0.83	0.82	0.78	0.78	1.0	0.62	0.63	0.69	0.63	0.91	0.8	0.99	0.96	0.99	0.71	0.65	0.67	0.74	0.73	0.9	0.7	0.71	0.67	0.69	0.71	0.6	0.68
Spov3_C0004.00097 (SYNC3)	0.72	0.7	0.78	0.99	0.7	0.75	0.68	0.85	0.6	0.57	0.69	0.66	0.82	0.74	0.98	0.92	1.0	0.61	0.67	0.68	0.71	0.71	0.67	0.69	0.74	0.71	0.75	0.7	0.67	0.71
Spov3_C0012.00086 (GRP2)	0.7	0.67	0.73	1.0	0.52	0.46	0.46	0.83	0.49	0.48	0.48	0.41	0.72	0.56	0.62	0.62	0.67	0.67	0.46	0.49	0.51	0.52	0.59	0.43	0.52	0.45	0.55	0.63	0.59	0.88
Spov3_C0022.00029	0.67	0.75	0.74	0.92	0.61	0.61	0.61	0.96	0.58	0.58	0.59	0.58	0.94	0.67	0.74	0.72	0.77	0.63	0.54	0.59	0.64	0.61	1.0	0.54	0.59	0.61	0.67	0.64	0.62	0.83
Spov3_C0092.00003 (IMB3)	0.54	0.57	0.71	1.0	0.5	0.6	0.55	0.9	0.53	0.47	0.61	0.58	0.92	0.63	0.94	0.76	0.81	0.33	0.51	0.54	0.55	0.61	0.61	0.46	0.54	0.54	0.63	0.55	0.55	0.73
Spov3_chr1.00275	0.59	0.67	0.76	1.0	0.55	0.62	0.63	0.91	0.54	0.5	0.65	0.57	0.88	0.47	0.86	0.88	0.91	0.85	0.68	0.68	0.72	0.71	0.72	0.6	0.73	0.7	0.73	0.59	0.5	0.64
Spov3_chr1.00283 (DEG10)	0.63	0.66	0.7	1.0	0.54	0.58	0.38	0.85	0.44	0.46	0.56	0.51	0.65	0.4	0.78	0.75	0.79	0.58	0.41	0.39	0.59	0.51	0.61	0.36	0.51	0.62	0.68	0.64	0.64	0.74
Spov3_chr1.00916	0.56	0.61	0.68	0.92	0.67	0.59	0.59	1.0	0.54	0.48	0.55	0.52	0.81	0.79	0.79	0.74	0.79	0.68	0.52	0.56	0.54	0.57	0.63	0.5	0.52	0.51	0.59	0.61	0.68	0.79
Spov3_chr1.04752	0.64	0.65	0.75	0.82	0.74	0.74	0.77	1.0	0.64	0.59	0.7	0.68	0.86	0.69	0.99	0.89	0.98	0.67	0.65	0.69	0.69	0.67	0.89	0.63	0.67	0.72	0.75	0.73	0.63	0.75
Spov3_chr1.04756 (LIF2)	0.72	0.74	0.78	0.92	0.63	0.71	0.79	1.0	0.65	0.64	0.71	0.68	0.86	0.64	0.96	0.94	1.0	0.65	0.66	0.71	0.76	0.73	0.87	0.71	0.73	0.74	0.8	0.75	0.61	0.67
Spov3_chr1.04780 (RPL24C)	0.67	0.71	0.79	1.0	0.6	0.71	0.66	0.97	0.63	0.61	0.76	0.71	0.84	0.75	0.91	1.0	0.99	0.65	0.67	0.66	0.79	0.77	0.69	0.71	0.76	0.74	0.75	0.72	0.61	0.71
Spov3_chr1.04838 (PP5)	0.76	0.71	0.78	0.98	0.68	0.72	0.73	1.0	0.68	0.67	0.69	0.67	0.76	0.76	0.92	0.94	0.91	0.52	0.61	0.64	0.73	0.7	1.0	0.69	0.77	0.71	0.74	0.77	0.71	0.7
Spov3_chr2.00847 (NOB1)	0.55	0.62	0.69	1.0	0.5	0.49	0.45	0.76	0.5	0.45	0.52	0.49	0.75	0.57	0.68	0.72	0.73	0.53	0.5	0.51	0.55	0.52	0.69	0.49	0.5	0.51	0.56	0.58	0.59	0.75
Spov3_chr2.01009 (ADNT1)	0.73	0.73	0.79	0.99	0.65	0.73	0.69	0.88	0.59	0.6	0.64	0.64	0.83	0.76	1.0	0.95	0.94	0.61	0.58	0.6	0.69	0.71	0.89	0.56	0.64	0.69	0.74	0.65	0.68	0.92
Spov3_chr2.01706 (UAP56a)	0.66	0.66	0.74	0.9	0.64	0.61	0.64	1.0	0.64	0.62	0.67	0.61	0.75	0.73	0.83	0.83	0.86	0.64	0.65	0.63	0.69	0.65	0.91	0.59	0.66	0.71	0.74	0.73	0.57	0.61
Spov3_chr2.01728 (Nug2)	0.77	0.82	0.85	0.97	0.78	0.74	0.74	0.94	0.72	0.67	0.72	0.7	0.91	0.76	0.89	0.86	0.89	0.69	0.66	0.7	0.75	0.68	1.0	0.74	0.73	0.74	0.8	0.79	0.65	0.67
Spov3_chr2.01885 (CYR1)	0.57	0.6	0.7	1.0	0.64	0.71	0.6	0.96	0.59	0.5	0.55	0.54	0.73	0.72	0.72	0.86	0.78	0.69	0.54	0.58	0.6	0.6	0.67	0.51	0.53	0.57	0.67	0.57	0.63	0.72
Spov3_chr2.03472 (RH17)	0.51	0.56	0.55	1.0	0.53	0.61	0.39	0.87	0.47	0.43	0.53	0.48	0.75	0.59	0.81	0.79	0.82	0.38	0.41	0.47	0.52	0.5	0.79	0.38	0.47	0.53	0.69	0.53	0.55	0.73
Spov3_chr2.04030	0.61	0.67	0.78	1.0	0.59	0.55	0.49	0.91	0.61	0.61	0.6	0.55	0.64	0.51	0.67	0.7	0.75	0.6	0.57	0.54	0.64	0.62	0.59	0.59	0.61	0.59	0.64	0.71	0.59	0.6
Spov3_chr3.01293 (EDA7)	0.49	0.53	0.61	1.0	0.47	0.53	0.4	0.7	0.4	0.33	0.44	0.39	0.58	0.36	0.6	0.66	0.67	0.45	0.42	0.44	0.41	0.43	0.67	0.38	0.45	0.42	0.47	0.52	0.47	0.54
Spov3_chr3.01345	0.63	0.59	0.62	1.0	0.51	0.64	0.49	0.78	0.56	0.48	0.47	0.46	0.64	0.55	0.74	0.77	0.77	0.53	0.38	0.41	0.43	0.46	0.46	0.46	0.49	0.44	0.51	0.51	0.59	0.64
Spov3_chr3.01497	0.55	0.62	0.66	1.0	0.49	0.57	0.41	0.9	0.47	0.46	0.5	0.52	0.75	0.76	0.86	0.92	0.91	0.62	0.47	0.5	0.62	0.52	0.73	0.51	0.52	0.54	0.55	0.54	0.48	0.64
Spov3_chr3.02583 (MTR4)	0.78	0.86	0.8	1.0	0.71	0.74	0.68	0.9	0.66	0.63	0.66	0.65	0.81	0.9	0.96	0.92	0.93	0.54	0.59	0.58	0.65	0.68	1.0	0.68	0.66	0.69	0.72	0.76	0.73	0.78
Spov3_chr3.02606 (MORF1)	0.53	0.54	0.7	1.0	0.45	0.47	0.36	0.81	0.46	0.5	0.55	0.49	0.66	0.39	0.67	0.7	0.77	0.49	0.47	0.47	0.57	0.51	0.68	0.42	0.51	0.59	0.59	0.56	0.59	0.9
Spov3_chr3.02796 (NFA2)	0.73	0.75	0.78	1.0	0.75	0.8	0.73	0.86	0.62	0.58	0.72	0.71	0.8	0.85	0.94	0.92	0.98	0.62	0.69	0.66	0.72	0.74	0.77	0.76	0.77	0.76	0.75	0.72	0.64	0.69
Spov3_chr3.02966 (TSN1)	0.74	0.79	0.75	0.79	0.64	0.62	0.66	0.91	0.59	0.59	0.64	0.6	0.77	0.66	0.94	0.87	0.89	0.55	0.65	0.65	0.71	0.7	1.0	0.56	0.63	0.7	0.75	0.68	0.63	0.72
Spov3_chr3.03041 (KHZ2)	0.71	0.78	0.7	0.93	0.6	0.61	0.57	1.0	0.66	0.7	0.71	0.66	0.9	0.66	0.88	0.89	0.97	0.81	0.64	0.67	0.76	0.74	0.85	0.7	0.74	0.72	0.75	0.69	0.69	0.77
Spov3_chr3.03301	0.67	0.69	0.76	1.0	0.68	0.63	0.65	0.92	0.61	0.56	0.63	0.59	0.84	0.63	0.78	0.81	0.78	0.65	0.58	0.61	0.7	0.63	0.67	0.65	0.67	0.66	0.7	0.74	0.63	0.67
Spov3_chr3.03362 (IMB3)	0.78	0.81	0.78	1.0	0.75	0.72	0.6	0.81	0.62	0.57	0.61	0.56	0.78	0.66	0.84	0.82	0.82	0.44	0.51	0.51	0.59	0.59	0.85	0.6	0.59	0.59	0.65	0.7	0.68	0.71
Spov3_chr3.03385 (CCT8)	0.75	0.78	0.8	1.0	0.73	0.73	0.72	0.99	0.62	0.68	0.72	0.67	0.88	0.72	0.95	0.92	0.92	0.75	0.67	0.66	0.78	0.72	0.9	0.68	0.74	0.75	0.81	0.79	0.71	0.81
Spov3_chr3.03773	0.66	0.71	0.64	1.0	0.62	0.55	0.44	0.96	0.52	0.52	0.63	0.5	0.74	0.43	0.62	0.72	0.82	0.68	0.45	0.53	0.56	0.54	0.65	0.46	0.58	0.59	0.6	0.67	0.68	0.9
Spov3_chr3.03870 (NEDD1)	0.54	0.58	0.68	1.0	0.54	0.54	0.5	0.78	0.52	0.47	0.56	0.5	0.7	0.54	0.72	0.69	0.71	0.46	0.5	0.48	0.55	0.53	0.68	0.62	0.61	0.56	0.65	0.7	0.51	0.42
Spov3_chr3.04438 (BBC1)	0.54	0.52	0.66	1.0	0.56	0.57	0.47	0.83	0.43	0.44	0.54	0.52	0.84	0.46	0.86	0.85	0.91	0.8	0.53	0.55	0.66	0.61	0.61	0.47	0.57	0.61	0.66	0.51	0.46	0.69
Spov3_chr3.05221	0.74	0.72	0.8	1.0	0.62	0.63	0.69	1.0	0.58	0.54	0.65	0.65	0.77	0.71	0.81	0.79	0.86	0.52	0.68	0.66	0.69	0.72	0.77	0.73	0.79	0.7	0.74	0.73	0.66	0.62
Spov3_chr4.00030 (UBP2)	0.77	0.8	0.78	1.0	0.67	0.62	0.63	0.88	0.6	0.62	0.66	0.59	0.81	0.76	0.71	0.74	0.78	0.73	0.56	0.5	0.6	0.63	0.76	0.58	0.64	0.6	0.67	0.73	0.72	0.86
Spov3_chr4.00862 (EMA1)	0.51	0.53	0.64	1.0	0.49	0.54	0.5	1.0	0.52	0.45	0.54	0.5	0.89	0.54	0.82	0.74	0.8	0.47	0.44	0.49	0.51	0.54	0.75	0.42	0.5	0.5	0.56	0.53	0.52	0.66
Spov3_chr4.00901	0.67	0.66	0.75	0.95	0.56	0.65	0.66	0.91	0.57	0.57	0.64	0.62	0.8	0.68	0.92	0.86	0.88	0.64	0.71	0.71	0.73	0.71	1.0	0.71	0.78	0.76	0.78	0.66	0.57	0.59
Spov3_chr4.02476 (TRM1a)	0.67	0.67	0.77	1.0	0.61	0.58	0.54	0.98	0.59	0.54	0.62	0.57	0.81	0.62	0.78	0.84	0.85	0.6	0.6	0.55	0.68	0.58	0.8	0.51	0.61	0.63	0.68	0.68	0.65	0.82
Spov3_chr4.02824 (LOS1)	0.67	0.73	0.8	0.98	0.74	0.65	0.66	1.0	0.59	0.54	0.6	0.57	0.78	0.68	0.87	0.83	0.84	0.51	0.57	0.58	0.63	0.64	0.9	0.6	0.62	0.61	0.66	0.67	0.58	0.62
Spov3_chr4.03396 (ELONGATION FACTOR-TU FAMILY)	0.63	0.67	0.74	0.96	0.54	0.61	0.58	0.86	0.53	0.51	0.63	0.57	0.84	0.66	0.89	0.86	0.94	0.47	0.57	0.58	0.65	0.63	1.0	0.54	0.61	0.6	0.64	0.61	0.53	0.66
Spov3_chr4.04573 (SWA2)	0.75	0.81	0.8	0.99	0.69	0.63	0.6	1.0	0.6	0.54	0.64	0.61	0.85	0.71	0.8	0.73	0.84	0.62	0.55	0.59	0.65	0.64	0.88	0.63	0.64	0.62	0.77	0.71	0.67	0.85
Spov3_chr4.04699	0.6	0.67	0.72	1.0	0.61	0.56	0.5	0.72	0.54	0.55	0.61	0.57	0.79	0.56	0.83	0.8	0.83	0.49	0.58	0.58	0.66	0.61	0.89	0.56	0.69	0.66	0.68	0.58	0.54	0.54
Spov3_chr5.00075	0.59	0.61	0.73	1.0	0.47	0.52	0.54	0.82	0.54	0.51	0.68	0.6	0.86	0.39	0.81	0.79	0.88	0.63	0.68	0.64	0.72	0.82	0.72	0.6	0.74	0.71	0.76	0.61	0.52	0.62
Spov3_chr5.00121	0.7	0.7	0.74	0.92	0.73	0.71	0.75	1.0	0.64	0.65	0.71	0.66	0.84	0.76	0.81	0.8	0.82	0.82	0.69	0.66	0.7	0.72	0.87	0.67	0.69	0.7	0.74	0.74	0.68	0.77
Spov3_chr5.00283 (NOF1)	0.74	0.73	0.76	1.0	0.68	0.66	0.67	0.9	0.59	0.56	0.63	0.63	0.82	0.65	0.82	0.81	0.84	0.52	0.53	0.51	0.56	0.61	0.73	0.59	0.63	0.61	0.67	0.71	0.68	0.74
Spov3_chr5.00880	0.72	0.83	0.76	0.92	0.63	0.66	0.67	1.0	0.58	0.53	0.62	0.6	0.79	0.77	0.91	0.91	0.91	0.65	0.71	0.6	0.7	0.74	0.86	0.71	0.67	0.72	0.72	0.72	0.62	0.72
Spov3_chr5.01146	0.67	0.69	0.75	1.0	0.63	0.65	0.62	0.81	0.62	0.58	0.69	0.65	0.84	0.74	0.9	0.99	0.98	0.62	0.69	0.68	0.79	0.75	0.84	0.77	0.8	0.76	0.75	0.61	0.58	0.8
Spov3_chr5.01877	0.67	0.69	0.77	1.0	0.68	0.7	0.66	0.94	0.6	0.57	0.65	0.63	0.87	0.69	0.89	0.9	0.93	0.7	0.61	0.63	0.69	0.67	0.73	0.6	0.68	0.66	0.73	0.74	0.63	0.76
Spov3_chr5.02968 (PES)	0.57	0.67	0.66	1.0	0.53	0.58	0.43	0.9	0.46	0.45	0.54	0.5	0.72	0.62	0.96	0.89	0.95	0.49	0.47	0.48	0.54	0.48	0.88	0.46	0.48	0.51	0.56	0.58	0.54	0.71
Spov3_chr5.03412 (RID2)	0.64	0.7	0.73	1.0	0.68	0.71	0.64	0.97	0.59	0.55	0.61	0.6	0.79	0.8	0.93	0.91	1.0	0.71	0.62	0.62	0.71	0.65	0.62	0.55	0.65	0.66	0.71	0.6	0.57	0.69
Spov3_chr5.04420 (eIFiso4G2)	0.74	0.78	0.82	1.0	0.66	0.67	0.72	0.99	0.68	0.65	0.71	0.67	0.88	0.71	0.99	0.9	0.97	0.64	0.67	0.66	0.7	0.72	0.88	0.71	0.72	0.71	0.71	0.7	0.67	0.76
Spov3_chr5.04521 (ATXR2)	0.69	0.78	0.73	0.94	0.69	0.77	0.71	0.86	0.64	0.61	0.62	0.61	0.81	0.84	1.0	0.91	0.97	0.67	0.66	0.66	0.75	0.7	0.81	0.67	0.72	0.72	0.75	0.68	0.71	0.76
Spov3_chr6.01456 (UAP56a)	0.69	0.67	0.73	0.92	0.55	0.54	0.61	1.0	0.6	0.62	0.65	0.6	0.79	0.68	0.79	0.77	0.86	0.57	0.61	0.61	0.7	0.69	0.91	0.58	0.66	0.67	0.74	0.73	0.61	0.64
Spov3_chr6.01902 (LOS4)	0.75	0.74	0.77	0.82	0.76	0.74	0.76	1.0	0.65	0.66	0.74	0.7	0.92	0.81	0.97	0.9	0.95	0.74	0.73	0.74	0.76	0.79	0.91	0.7	0.75	0.73	0.79	0.74	0.7	0.84
Spov3_chr6.02295 (ProRS-Cyt)	0.8	0.86	0.82	1.0	0.71	0.75	0.73	0.91	0.61	0.62	0.68	0.63	0.73	0.84	0.9	0.88	0.89	0.63	0.67	0.66	0.72	0.75	0.87	0.77	0.78	0.73	0.77	0.78	0.73	0.7
Spov3_chr6.03169	0.58	0.59	0.68	1.0	0.53	0.55	0.54	0.91	0.54	0.48	0.43	0.43	0.65	0.57	0.82	0.89	0.81	0.54	0.36	0.49	0.48	0.51	0.49	0.52	0.49	0.53	0.53	0.58	0.76	0.7

Details

Expression values normalized per gene (using the maximum value, Green cells indicate low expression and red high. (Dark gray cells indicate missing values)