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Heatmap: Cluster_94 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
2.76 - 0.23 2.19 1.0 -0.59 -0.27 -0.47 2.48 -0.48 0.78 - - - -0.16 0.04 - - - - 1.81 - - - - - - -0.21 - - -
2.9 1.33 1.61 1.64 1.73 - -0.27 - - -1.03 - 0.05 -2.12 - - 0.06 -3.94 -1.63 - -0.81 0.37 - - -1.34 1.03 -27.33 1.42 -1.96 - - -1.75
- 2.4 - - - - - 1.37 1.48 1.48 - - 1.63 3.2 - - 1.46 1.34 - - - - - - - - - - - - -
3.96 - - - 1.98 0.63 - - - - - - - - 0.84 - 1.84 - 1.59 - - - - - - - - - - 0.6 -
2.51 1.36 - 0.64 0.3 1.25 - - -1.52 -0.59 - -1.58 -0.67 0.02 - 1.18 -0.04 -0.79 -0.8 -0.3 0.11 -0.55 - - 0.79 -0.38 1.14 -2.08 0.64 0.17 -
2.18 -1.01 - -12.67 1.45 0.25 -0.08 -0.98 - -1.6 -13.6 -1.25 1.93 -0.92 - -0.78 1.63 -0.24 0.47 -1.34 -1.71 1.51 0.74 -0.49 - - -0.81 -1.45 0.44 0.16 -2.02
2.4 - - 0.81 2.24 -1.77 - -1.36 - - - - -0.4 -1.24 0.76 -1.35 0.49 0.45 2.41 - - 0.02 -0.82 -1.44 0.28 - 0.49 -1.63 0.29 - 0.13
2.68 - 1.19 - -2.23 0.64 1.33 -9.69 -20.55 - 2.97 1.01 - -22.1 2.42 -20.98 -14.5 - -10.13 -2.65 -25.96 1.42 -24.22 -24.97 - - -26.94 - - -10.71 -
2.0 0.7 0.74 -0.38 -1.04 0.25 -0.07 0.13 -0.25 0.4 -2.05 0.06 -0.33 -2.82 0.03 -0.69 -1.83 1.06 0.33 0.19 0.61 -0.98 -0.02 -0.09 -3.48 0.54 -2.28 -0.92 -0.87 -0.63 -0.03
2.87 1.13 - - 1.71 - - - - - - - - 2.64 - - - 2.27 0.76 - - - 0.94 - - - - 1.84 - - -
0.93 0.35 1.8 -0.49 0.26 -1.2 -2.35 - -0.82 -2.58 0.13 -0.89 0.17 0.77 -2.19 -1.17 -1.05 -0.8 1.71 - -2.37 -0.39 0.77 -2.31 - 1.57 - -1.44 0.27 1.5 0.47
2.28 1.46 1.48 0.29 -3.84 -0.68 0.89 1.48 - -1.5 -1.13 -0.76 1.37 - -2.41 -2.64 -0.37 -1.5 -2.65 -1.39 -0.06 -0.31 -1.1 -0.88 -0.48 -1.73 -0.71 1.38 -3.66 -1.12 -1.0
2.28 - - - -0.79 1.76 - 0.38 - - -0.43 - 1.3 - 0.7 -0.35 0.36 - 0.29 1.72 - - -0.01 1.02 - -0.81 0.3 -0.75 - 0.39 1.46
2.61 -1.25 - - 0.84 -1.61 - -1.46 - -1.71 1.89 -1.67 - -0.5 0.84 -0.37 0.39 -0.17 1.04 -1.84 -0.89 -0.53 1.96 0.25 -0.12 - -1.86 -1.65 - 1.02 -
1.84 2.63 - - 0.63 - - - - 1.33 - - - 2.36 - - - - - - 0.94 - 1.11 - 1.28 1.28 - - - - 1.65
3.23 - - - - - - - - - - - - - - - - - - - - - - - 3.94 - - 2.65 - - -
1.91 1.12 - - - 1.61 -1.21 - - - - -1.46 - 1.94 -1.13 0.45 - - -0.19 -1.49 0.56 0.95 - -0.04 - -0.41 -0.14 - 1.94 1.54 0.65
2.0 - 1.82 0.49 -0.8 - - -0.63 0.65 -0.92 - - 0.84 - 0.88 -0.68 - 1.67 0.7 0.07 -0.89 - - - 0.19 1.59 -1.02 - - -0.88 1.53
1.72 0.02 -0.37 -0.57 0.68 0.34 0.88 -0.48 -0.03 -0.97 0.16 -0.75 -3.33 -1.84 0.06 -0.81 -1.01 -0.68 0.44 -0.26 -0.65 -0.71 -0.81 0.96 0.59 0.09 -0.26 0.31 0.55 -0.41 -0.51
2.94 - - - - - 2.45 - - - - - - 2.88 - - - - - - - - - - 2.45 2.34 - - - - -
1.52 0.22 -1.66 - 0.91 - - -0.44 0.17 1.47 0.2 0.96 0.84 0.41 -1.34 0.44 - - -0.05 -0.05 0.35 1.36 -3.26 0.6 - -0.06 1.16 - -1.8 -1.65 -0.05
2.59 - - - 1.45 - 0.16 - - - 0.16 - - 1.18 0.2 - - 2.17 0.08 - - - 1.96 -0.24 1.63 - 0.22 1.01 - - -
2.48 - 0.58 1.77 0.04 1.49 1.58 - -0.13 - 0.12 - - 0.8 1.16 - -0.99 - -0.73 0.28 - - - 1.14 - - -0.9 -0.43 -0.14 -0.86 -1.16
3.04 0.1 2.27 1.65 -0.14 0.75 -0.15 - - - - 1.15 -0.78 - - - -0.99 - - - -0.18 - - - - -0.18 -0.96 - 0.93 0.01 0.79
1.85 -0.7 0.01 -0.74 0.03 0.13 -3.55 -1.05 0.22 0.97 -0.67 0.92 1.45 -0.36 -1.21 -0.09 -0.71 -1.35 -0.41 -1.05 -0.58 -1.21 -0.56 -0.95 0.45 -1.25 0.33 0.5 -0.55 -1.82 1.02
1.79 - 0.75 - -1.19 - - 0.45 2.08 1.15 1.71 0.9 - - - -0.85 0.03 - - 0.48 -0.96 -0.76 - -0.42 1.71 - - - - 1.33 0.91
1.25 -2.63 - -0.62 -0.29 1.45 -0.49 0.38 0.2 1.0 -0.77 -0.02 -0.45 0.7 1.32 -2.7 -0.89 -0.22 0.86 -0.15 - -0.16 -0.17 -0.35 -2.86 -0.32 -1.36 -0.54 -0.26 1.12 -0.32
4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
0.67 0.62 -0.22 0.49 -0.31 -0.33 -0.01 0.19 -0.23 0.54 0.35 -0.54 -0.16 -0.42 0.35 -0.89 -0.97 1.24 0.55 -0.54 -0.39 -0.14 -1.6 -0.3 -0.26 0.6 0.18 -0.81 -0.32 0.03 -1.16
2.79 1.62 - - -0.57 1.82 -0.03 -0.07 - 1.74 1.63 - - 0.37 - - - -0.94 - - - - 1.13 0.57 - - -0.6 - 0.74 -0.67 -
2.01 - -0.75 -0.73 -1.31 - 0.67 0.99 -1.08 - 0.67 0.82 -0.91 0.85 -0.7 - 2.05 - -0.12 -0.08 -1.09 1.63 - -0.99 - - -0.14 -0.98 0.06 -0.04 0.59
4.19 0.52 - - - - - - - - - - - - - - - - - - -1.83 - - 0.98 1.39 - - 2.67 - - -22.02
3.5 - - - - - 0.25 - 0.67 - - - - - - - - -0.22 - - -0.37 - 3.93 - - - - - - - -
1.61 0.39 0.64 -1.32 -0.81 -1.14 0.79 0.99 0.1 -0.21 -0.15 0.34 -0.03 -1.04 0.01 -1.25 -0.48 0.09 0.07 0.1 0.23 -0.14 -1.8 -0.22 -0.19 -0.44 -0.53 -0.57 -0.3 -0.4 0.33
2.99 - - - 1.92 - - - - 2.82 - - - - - - 2.28 - - - - - - - - - - - 1.0 1.82 0.85
1.68 -1.49 - 1.7 -0.77 - 0.04 - -1.85 - 1.91 -0.76 - -0.39 -0.56 -0.49 -0.08 -0.84 1.85 -0.34 -1.98 -0.63 - -0.9 0.52 - 0.84 -1.76 2.21 -1.52 -
2.04 - - - - - - - 1.65 - - - 1.9 - 1.89 - 1.83 - 2.3 - - 1.99 - - - - - - 1.94 - -
2.1 - -20.73 -19.98 1.36 - 2.67 -21.22 0.02 - 1.12 -0.05 - 1.86 1.3 - - 1.41 -24.36 -17.55 -0.08 - 0.1 - - - -0.11 -0.17 - -21.77 0.05
4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
3.68 - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.16 - 3.21
3.29 1.13 - - - 0.31 - - 0.4 - 1.82 - - 1.77 - 2.72 0.51 - - - - - - - - - - - - 0.58 -
2.21 - - - -1.71 2.03 - - - - -0.27 0.3 0.97 0.31 -1.27 0.44 0.02 1.66 - - - - - - - -0.76 - -0.52 1.63 0.85 2.19
2.24 1.3 0.29 -0.59 0.09 -0.28 0.51 -0.82 -0.2 -2.89 -1.27 0.05 - - - 0.39 0.73 -1.38 -0.21 -0.04 -0.74 -0.42 - 0.23 -0.92 0.65 0.72 0.89 0.46 -0.95 -1.33
4.75 - - - - 2.03 - - - - - - - - - - - - - - - - - - - - - - - - -
3.47 - - - - - 3.11 1.17 - - - - 1.98 - - - - 2.35 - - - - - - - - - - - - -
3.33 1.35 - - - - - - - - - 0.03 -1.28 -1.38 - - - - -0.18 0.92 -0.78 - - - 2.32 0.71 -0.34 - 0.7 0.97 1.17
3.25 3.14 2.56 - - - - - - - - - 1.23 - - - - - - - - - - - - - - - - 2.16 -
1.52 -1.51 - 0.04 1.03 0.6 0.36 0.43 0.92 -0.09 -1.61 -1.68 -1.61 0.21 -0.47 -0.14 -0.52 -0.69 0.61 -0.83 -0.82 -1.69 0.17 -0.72 1.73 -1.88 - 0.18 -0.68 0.87 -0.32
3.89 - - - - - - - - - 1.6 - - - - - - 2.31 -0.01 - - - 1.53 0.56 -0.52 - - - - - 1.12
3.75 2.87 - - - - 0.57 - - - - - 0.44 - - 2.23 - - - 0.24 - - - - - - - - - 0.66 -
1.33 -3.1 - -1.56 -0.51 0.53 -0.78 -0.27 -0.59 0.32 -0.68 0.58 -0.79 0.83 0.93 -1.01 -2.3 1.12 0.16 0.84 0.37 -0.37 0.22 1.34 0.09 -0.23 0.13 -0.53 -0.45 -2.4 -
2.31 0.89 1.79 1.7 -1.35 -2.74 0.53 -0.18 -0.93 -1.67 -1.12 -3.73 0.75 -2.52 -0.98 -1.29 -0.9 1.89 -1.04 -2.47 -0.98 -3.58 0.67 -1.94 0.18 -1.44 -0.65 -1.3 -2.01 -2.15 -3.34
3.77 - - - 0.36 -0.43 -0.24 - - - - 0.61 -0.31 0.77 1.75 - - 0.52 0.98 1.02 - -0.25 -0.28 - - - - - - - -
2.95 - - - 2.04 2.0 -0.12 -0.34 - - 2.5 -0.07 - - - - - - 1.42 - - 1.3 - - - -0.35 - -0.16 - - -
2.27 - - -0.19 - - 0.69 1.41 - -0.26 - - - 1.74 - - -0.57 - 0.65 - 1.47 1.99 - -0.54 - 2.02 1.27 -0.47 - - -
3.3 3.26 - - - - - - - - - - - - - - - 3.54 - - - - - - - - - - - - -
1.11 0.46 -0.59 -0.7 1.58 - - - 1.17 - -0.74 0.26 - 1.84 1.04 -0.38 - 0.08 1.62 -0.89 - - - - - 1.3 - - -0.69 -0.82 2.15
2.65 - - - -1.08 0.29 -0.41 - - 1.79 -0.67 - - - 1.43 2.59 - - 0.66 -0.91 - - - 1.78 1.51 - - -1.0 - -0.76 -
2.72 2.85 1.41 2.13 -1.54 - - - - - - - - - - - - 2.21 - - - - 1.8 - - - - - 0.14 -0.66 -
3.36 - 0.84 - 1.55 - 0.94 - 0.32 - - 0.35 1.6 - 0.7 - - - - - - - 0.52 - - 1.36 - 0.62 - - 0.49
2.55 - - - 2.04 - 2.51 - - 2.36 - - - - - - - - - 2.19 - - - - 2.5 - - - - - -
1.38 0.88 -1.65 -1.23 -0.5 -0.68 0.25 0.25 -0.36 1.02 -0.2 0.43 -0.74 -0.28 -1.25 -1.01 -1.06 -4.48 0.5 0.65 -1.75 0.04 -2.73 -0.1 0.04 -1.4 0.22 0.21 0.4 0.58 1.17
1.07 0.28 -0.15 -0.54 0.11 -0.72 1.06 1.41 -0.44 -0.89 -0.42 0.12 -0.51 0.71 0.4 -1.15 -1.32 -0.96 -0.58 -3.83 -1.39 0.37 -0.7 0.06 0.15 -1.71 0.26 -0.14 0.5 0.13 0.51
3.16 2.44 - -1.98 -0.69 -1.34 - -0.7 -1.48 - - -1.46 1.64 0.47 0.69 -1.85 - 0.41 - -1.43 -1.43 - 0.87 - - -2.28 -0.9 - - 0.25 0.85
4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
3.12 - - - - 0.78 - 1.63 - - 3.64 0.7 - - 0.94 - - - - 0.6 - - - - - - - - - - -
2.19 - - -0.31 - -1.7 -1.3 -0.38 -1.61 -2.56 -0.36 -0.93 -0.07 -0.25 -1.23 0.81 -0.4 0.6 0.31 -0.81 -0.86 - 1.63 1.06 -0.17 - -0.15 -1.48 -1.21 0.61 2.16

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.