1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_184 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

 Transpose table  Download table
Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000419 (AGP16)
 0.27 0.19 0.93 0.64 0.08 -2.37 -1.42 0.23 -0.33 0.11 0.1 0.48 -0.37 -2.16 -2.7 -1.27 -1.33 -1.13 -1.55 -0.64 -0.46 -0.52 -1.08 -0.13 0.02 1.46 0.56 0.85 0.38 1.36 -0.1
Bra001168 (AIF1)
 -3.15 -4.19 -0.97 -2.37 -2.81 -5.53 -1.48 -1.95 -1.01 -0.64 -0.35 -1.13 0.32 -2.87 -2.57 0.4 -0.87 -0.88 -0.82 0.7 0.01 -1.19 -0.06 1.07 1.28 1.98 1.45 -0.6 0.08 1.54 1.36
-2.5 -2.37 -2.38 -0.5 -0.89 -2.24 0.13 -0.7 -0.15 0.01 0.14 -0.09 0.56 0.02 -0.97 0.3 -0.37 -0.93 -0.47 0.12 -1.07 -1.07 0.07 -0.16 0.22 2.29 0.38 0.47 0.73 0.56 0.25
Bra002567 (ORP3C)
 -6.63 -7.22 -6.34 -7.62 -7.06 -5.83 - -0.5 -5.97 0.15 -0.14 -5.55 -1.89 -1.8 -5.51 -0.51 -0.1 -5.27 -0.49 0.01 -0.96 -0.24 0.43 1.08 1.51 0.93 1.49 0.63 2.13 1.66 1.46
Bra003194 (BME3)
 -1.25 -1.1 -0.63 0.16 0.33 -0.5 -0.86 -0.36 -0.72 -0.58 -0.36 -0.77 -0.51 0.24 -0.62 -0.41 -0.79 0.71 -1.05 -0.51 -0.75 -0.96 0.84 0.11 0.24 2.41 -0.06 -0.09 0.14 0.62 -0.48
Bra003274 (ZRK2)
 -2.09 -2.77 0.1 -2.94 -0.48 -1.94 0.68 - -3.57 -7.78 - - - -5.7 - -5.08 - -5.71 -3.4 - - - 0.27 1.75 1.52 2.24 1.39 1.83 2.13 0.9 1.0
Bra004621 (WIH2)
 0.05 -0.31 -0.09 0.46 -1.11 -1.7 -0.52 -0.21 -2.05 -0.03 -0.42 -0.65 -0.63 -0.75 -1.52 -0.9 -0.34 -0.07 -0.84 -0.24 -0.74 -0.69 -1.76 0.74 1.0 1.62 0.9 0.83 0.99 0.74 0.09
Bra005100 (KTF1)
 -3.59 - - - -6.28 -6.25 - - - - - - -5.06 - - -4.42 - -4.0 -5.09 -6.15 - -6.32 2.45 1.36 1.5 2.39 1.99 1.92 0.99 1.57 0.91
Bra006220 (XTH5)
 -4.93 -6.37 -6.03 -4.51 - -4.16 -0.91 0.7 -0.35 -0.04 0.65 -0.32 -0.77 -2.7 -2.82 -0.81 -0.28 -2.87 -1.96 -0.35 0.01 -0.69 -0.75 0.42 1.27 1.65 1.27 -0.53 1.34 1.91 1.38
Bra007009 (TRM19)
 -2.76 -2.76 -3.94 -1.58 -1.42 -1.48 -1.91 0.3 -1.16 -0.3 -2.37 -0.07 0.03 -0.72 -0.07 -1.52 -0.78 -0.08 -2.16 -0.63 -1.96 -1.67 1.35 0.79 0.53 2.13 0.41 1.01 1.24 1.14 0.83
Bra009510 (LMI1)
 -1.69 - - - - -1.51 - - - -0.71 - - -1.88 - -0.37 -1.85 - -0.01 - - - - 1.57 0.66 0.15 2.88 0.78 1.29 0.9 1.19 2.61
-1.08 -1.15 -1.19 -0.19 0.45 0.07 -0.55 -0.63 -0.73 -0.43 -0.74 -0.55 0.09 0.32 0.21 -0.25 -0.36 0.59 -0.37 -0.48 -0.72 -0.58 0.5 -0.07 -0.09 2.31 -0.22 -0.23 0.02 0.0 0.06
Bra009779 (GLR1.4)
 -7.98 - - -6.3 - - - - -8.22 - - -8.44 - - - - - - - - - - -0.79 1.18 1.71 3.58 2.16 -1.16 0.35 1.47 1.99
Bra010187 (UBP11)
 - - - - - - - - - - - - - - - - - - - - - - - - - 3.86 - - - - 4.05
Bra010678 (CYP96A11)
 - - - - - - - - - - - - - - - - - - - - - -4.84 0.96 0.95 1.2 3.2 1.33 0.35 1.51 2.0 2.31
Bra010827 (SAUR61)
 0.19 -0.57 -0.33 0.38 0.08 -1.55 -0.14 -0.2 0.59 -0.49 1.09 0.35 -0.04 -1.69 -2.29 -0.54 -0.38 -1.28 -0.91 0.11 -0.08 -0.07 -1.43 -0.08 0.59 1.08 0.35 0.29 0.02 0.45 0.69
0.08 -0.37 -0.41 0.14 -0.02 -0.92 -0.91 -0.69 -0.29 -0.1 0.23 0.05 0.59 -0.25 -1.25 -0.15 -0.27 0.06 -0.6 -0.51 -0.33 -0.62 0.51 -0.09 0.22 1.39 0.16 0.14 0.5 0.51 0.21
Bra011585 (PIP3)
 0.13 0.48 0.46 0.77 -0.76 -0.83 -0.51 -0.15 -1.05 -0.6 -0.5 -0.62 0.06 -0.84 -0.96 -0.71 -0.48 -0.81 -1.17 -0.72 -0.66 -0.79 -0.54 0.27 0.48 1.86 0.57 0.09 0.42 0.66 0.59
-0.73 -0.81 -1.07 -0.4 -1.15 0.36 0.16 -0.47 -0.13 -0.38 -0.06 -0.39 -0.48 -0.07 0.12 0.29 -0.17 -1.31 0.08 0.46 0.05 0.14 -0.88 0.27 0.43 1.75 0.08 -0.12 0.37 -0.15 0.2
Bra012220 (RLP50)
 -3.11 -2.38 -1.14 -2.59 -4.35 -2.72 -2.88 -1.39 -2.85 0.11 0.25 -0.74 -1.58 -1.05 -0.67 -1.16 -1.31 0.26 -3.07 -3.17 -2.26 -4.25 1.56 0.85 0.88 2.12 1.04 0.69 0.86 1.51 1.64
-0.41 -0.14 0.08 0.25 -0.75 -1.76 -1.28 -0.6 -0.56 0.65 0.5 0.08 0.54 -1.47 -1.82 -0.2 -0.5 -0.92 -2.54 -0.95 -0.49 -0.32 -0.81 0.31 0.7 1.44 0.82 -0.13 0.02 0.96 1.14
- - - - - - - - - - - - - - - - - - - - - - 1.04 - - 3.6 1.58 - 1.82 1.11 3.03
Bra012743 (RR2)
 0.13 0.14 -0.44 0.3 0.4 -0.85 -1.53 -0.41 -1.12 -1.42 -2.07 -1.51 -0.47 -1.07 -1.36 -1.33 -1.27 0.11 -2.29 -1.62 -2.08 -2.56 0.02 0.48 0.7 2.08 0.56 0.92 1.43 1.05 0.69
-0.72 -0.5 0.38 0.05 0.24 -0.18 -0.76 -0.35 -1.2 -0.92 -0.96 -1.02 0.24 -0.12 -0.5 -1.01 -0.57 -0.09 -1.07 -1.07 -0.78 -1.22 0.75 0.22 0.24 1.84 -0.05 0.69 0.86 0.87 0.29
-0.84 -0.59 -0.07 -0.23 -1.33 -1.1 -0.79 -0.41 0.14 -0.01 0.38 0.55 -0.07 -0.21 -0.44 -0.51 -0.06 -0.51 -0.52 -0.38 -0.08 0.21 -0.48 0.13 0.05 1.68 0.27 0.03 0.42 0.66 0.28
Bra015386 (ELMO2)
 -1.72 -1.71 -1.43 -2.12 -0.32 -0.85 -1.9 -2.37 -2.05 -2.56 -1.31 -1.75 -2.19 -0.18 -0.03 -1.87 -2.14 0.04 -1.34 -2.7 -1.65 -2.91 0.8 1.59 1.21 2.19 0.96 1.42 1.35 0.71 0.84
Bra016494 (TCS1)
 -0.41 -0.12 -0.61 0.23 -0.42 0.23 -0.45 -0.48 -0.46 -0.19 -0.18 -0.41 0.2 0.65 0.29 -0.11 -0.04 0.24 0.03 -0.44 -0.31 -0.24 0.03 -0.19 -0.31 1.83 -0.33 0.08 -0.0 -0.46 -0.64
-1.88 -2.07 -1.42 -0.17 0.39 -0.32 -1.12 -0.75 -1.41 -0.79 -0.82 -1.21 -0.27 0.65 0.27 -0.89 -0.6 0.14 -1.12 -0.9 -0.85 -0.61 1.16 -0.54 -0.3 2.84 -0.53 -0.38 0.45 0.76 -0.82
Bra016683 (PAP3)
 -0.3 -0.78 -0.76 0.44 -2.41 -0.88 0.26 0.5 0.53 0.27 0.37 0.52 0.63 -1.96 -2.35 -0.02 0.14 -2.02 -0.6 -0.07 0.35 0.27 -0.36 0.26 0.34 0.89 0.24 -0.21 0.05 0.13 0.32
-0.64 0.36 0.33 -0.43 -2.06 -2.07 -4.12 -4.69 -3.73 -3.89 -3.03 -2.03 - -3.03 -3.23 - - -2.04 - - -1.24 - -1.1 0.59 0.09 3.4 0.13 0.74 1.06 1.95 1.48
Bra016888 (CYP712A1)
 -1.87 -3.56 -1.4 -1.37 -1.31 -2.18 -1.89 -1.34 -0.74 -0.12 -0.41 -0.43 -1.83 -2.02 -0.66 -0.63 -1.0 -1.78 -0.65 -0.93 -0.52 -0.76 -0.0 1.47 0.93 2.27 0.63 1.73 1.47 0.74 -0.46
-0.88 -0.23 -0.43 -0.14 -0.12 -0.51 -1.23 -0.61 -0.28 -0.83 -0.41 -0.77 -0.55 -0.27 -0.43 -0.53 -0.89 -0.67 -0.76 -0.55 -0.84 -0.55 0.87 0.72 0.66 1.48 0.71 0.62 0.74 0.76 0.6
Bra018387 (DWF2)
 -1.67 -1.45 -1.04 0.42 -0.95 -3.15 -1.59 -1.56 -3.02 -1.84 -1.79 -2.12 -1.53 -2.41 - -0.26 -1.8 -0.95 -1.4 -1.57 -1.85 -0.84 -0.7 0.87 0.87 2.46 1.68 0.81 1.13 1.67 1.29
Bra018951 (J2)
 - -5.82 -2.23 0.49 -5.57 -1.86 - - - - - - - - - - - - - - - - 1.73 1.32 1.82 2.44 1.61 1.41 1.67 1.45 1.42
Bra019554 (MSS3)
 -1.42 -2.15 -1.13 0.63 0.47 -0.28 -0.78 -0.84 -0.72 -0.47 -0.86 -0.49 -0.66 0.92 0.19 -0.25 -0.56 0.49 -0.42 -0.67 -0.53 -0.46 -0.23 0.15 -0.06 2.29 -0.03 0.34 0.54 0.14 -1.09
- -5.02 -4.08 -4.95 - -3.83 -3.52 -4.54 -0.84 -2.22 -2.68 -2.32 -1.53 -2.5 -4.21 -1.71 -1.84 -2.16 -2.92 -1.43 -3.04 -2.1 0.54 0.11 1.25 2.05 1.79 -0.59 2.02 2.1 2.53
Bra023656 (SAUR21)
 -4.15 -0.81 -0.7 -1.43 -4.2 -3.75 - -4.38 -2.18 -1.86 -2.88 -5.15 -3.41 - - - -3.23 -5.25 -3.4 -2.28 -5.11 -1.34 -3.48 1.58 1.68 2.84 1.56 1.52 1.45 2.06 0.54
0.13 -0.22 0.01 0.13 0.26 -1.19 -0.6 -0.21 0.04 0.03 0.39 0.77 -0.54 -1.73 -1.6 -0.81 -0.86 -1.04 -0.93 -0.37 0.06 -0.19 -0.61 0.33 0.39 1.17 0.54 0.41 0.49 0.65 0.42
Bra024672 (KDR)
 -1.06 -0.52 0.12 -0.18 -1.06 -1.83 -0.13 -0.0 -0.09 0.32 0.72 0.54 0.01 -2.39 -2.98 -0.2 -0.03 -1.25 -0.4 -0.05 0.12 0.29 -0.51 0.53 0.76 1.2 0.74 0.09 0.1 0.12 0.32
-0.48 -1.06 -0.18 0.21 -0.62 -0.65 -1.21 -0.5 -0.41 -0.78 0.07 -0.97 -0.96 0.25 -0.69 -0.64 -0.59 -0.4 -1.26 -0.63 -1.59 -0.8 1.28 0.44 0.47 1.53 0.32 0.47 0.89 0.96 0.68
Bra026616 (IME)
 -3.1 -1.24 -1.85 -2.09 -0.59 -0.78 -1.27 -1.74 -1.24 -1.19 -1.23 -1.1 -0.78 -0.96 -1.74 -1.73 -1.25 -0.93 -0.48 -1.13 -2.14 -1.96 1.7 1.6 1.03 1.28 1.21 1.79 1.23 0.75 0.45
Bra026669 (PIN4)
 -0.43 -0.25 0.3 -0.37 0.22 -1.0 -0.81 -0.51 0.05 0.31 0.45 0.25 0.12 -0.65 -0.75 -0.28 -0.46 0.01 -1.05 0.03 -0.07 -0.1 0.39 -0.11 0.11 1.5 0.27 -0.4 0.43 0.11 -0.24
-1.18 -3.37 -4.21 -3.77 -0.55 -0.78 -1.67 -1.9 -1.01 -1.78 -0.42 -0.6 -0.43 -0.9 -0.15 -0.14 -1.71 -0.08 -0.31 -0.08 -0.5 -1.24 1.72 0.44 0.27 2.8 0.31 0.9 0.89 -0.0 -1.96
Bra027045 (AFB5)
 -0.59 -0.74 -0.72 -1.19 0.0 -0.09 -2.16 -3.07 -1.68 -0.59 -1.27 -0.15 0.21 -0.2 -0.34 -0.47 0.04 -0.12 -0.93 -2.98 -3.55 -1.02 0.82 0.31 0.17 2.51 0.34 0.2 0.97 0.64 0.7
-2.11 -1.67 -1.06 -0.59 -1.81 -1.42 -1.98 -0.59 -0.47 -0.8 -0.36 -1.2 0.19 0.05 -0.26 -1.32 -1.12 -1.15 -0.21 -0.8 -0.0 -0.54 1.15 0.83 0.44 2.05 0.33 0.87 1.08 0.96 0.21
Bra027763 (ASD2)
 -0.27 0.15 -0.31 0.63 -0.24 0.02 -0.68 -0.42 -0.56 -0.11 -0.31 -0.19 -0.2 0.39 0.16 -0.04 0.3 0.21 -0.43 -0.2 -0.35 -0.14 -0.31 -0.15 -0.31 1.64 -0.4 0.04 0.01 0.01 -0.36
- - - - - - - - - - 2.0 - - - - - - - - - - - - - - 3.71 0.71 - 1.62 1.57 2.63
Bra031036 (GAUT11)
 -1.97 - - - -1.46 -2.54 - - -1.47 - -2.75 - -1.48 - - - -1.18 - -1.43 0.92 - -0.45 -0.29 0.57 0.46 2.42 1.87 -0.71 1.13 1.72 2.83
0.57 0.41 0.68 0.89 0.02 -1.0 -1.56 -1.21 -0.5 -0.57 -0.54 -0.23 -0.48 -1.41 -1.86 -1.38 -1.48 0.44 -0.68 -0.53 -1.47 -2.14 0.86 0.26 -0.49 1.91 -0.25 -0.6 0.11 1.46 0.42
Bra032161 (MES6)
 - - - - - - - - - - - - - - - - - - - - 1.23 - 0.26 - 1.74 3.53 1.34 - 1.32 - 2.91
Bra034182 (AOP)
 -2.55 -1.97 -1.53 -0.48 -0.83 -0.21 -0.96 0.13 -0.78 -0.11 -0.31 -0.71 -0.25 0.83 0.14 0.16 -0.23 -0.05 -0.59 -0.43 0.0 -0.83 0.54 -0.08 -0.31 2.04 -0.39 0.42 0.5 0.83 0.39
Bra034298 (FDH)
 -0.3 -0.17 -0.07 0.35 0.1 -0.64 -0.5 -0.29 0.07 0.05 0.02 -0.12 -0.01 0.18 -0.23 0.04 -0.08 0.08 -0.49 -0.24 -0.17 -0.18 0.02 -0.19 0.02 0.96 0.14 0.14 0.38 0.18 0.02
Bra034870 (MSS3)
 -1.42 -2.15 -1.13 0.63 0.47 -0.28 -0.78 -0.84 -0.72 -0.47 -0.86 -0.49 -0.66 0.92 0.19 -0.25 -0.56 0.49 -0.42 -0.67 -0.53 -0.46 -0.23 0.15 -0.06 2.29 -0.03 0.34 0.54 0.14 -1.09
Bra035321 (eIFiso4G2)
 - -4.12 - -4.56 -2.4 -3.4 -4.54 -4.59 -2.84 -2.06 -2.89 -1.47 - -0.87 -1.84 -4.06 -2.28 -4.46 -2.23 -1.95 -2.32 -3.28 2.15 1.22 1.53 2.18 0.48 1.38 1.61 1.9 1.47
Bra035613 (PEX5)
 - - - - - - - - - - - - - - - - - - - - - -7.32 1.58 1.36 1.25 2.87 1.72 1.1 1.51 1.9 1.89
Bra036536 (ESE3)
 -1.37 -1.03 -2.93 -1.28 -2.91 -5.79 -1.74 -2.42 -1.31 -0.7 0.44 0.26 0.42 - - -1.75 -1.83 -1.06 -3.21 -0.32 0.2 -1.09 1.17 -0.24 0.56 2.61 1.29 0.72 0.23 1.33 1.02
Bra037137 (sks17)
 -0.76 -0.57 -0.68 -0.34 -1.22 -0.57 -0.39 -0.17 -0.46 -0.47 -0.06 -0.11 0.09 -0.19 -0.53 -0.1 -0.3 -0.57 -0.41 0.05 0.03 0.1 -0.57 0.37 0.51 1.97 0.72 -0.24 0.15 0.14 0.36
Bra037583 (PUR4)
 -1.46 -1.49 -1.61 -1.29 -0.29 -0.87 -1.91 -0.58 -1.17 -0.56 -1.49 -0.96 -1.25 -0.17 0.12 -0.27 -0.65 -0.7 -1.06 -0.81 -0.78 -1.14 1.49 0.74 0.88 1.72 0.83 0.45 0.78 1.08 1.07
Bra037722 (MSS3)
 -1.42 -2.15 -1.13 0.63 0.47 -0.28 -0.78 -0.84 -0.72 -0.47 -0.86 -0.49 -0.66 0.92 0.19 -0.25 -0.56 0.49 -0.42 -0.67 -0.53 -0.46 -0.23 0.15 -0.06 2.29 -0.03 0.34 0.54 0.14 -1.09
Bra037833 (PUB31)
 -0.11 0.05 0.83 0.65 -0.42 -1.03 -1.66 -1.0 -0.71 -1.08 -0.43 -0.91 0.64 -1.06 -1.56 -0.67 -1.39 0.05 -1.17 -0.92 -0.98 -0.74 0.79 -0.06 0.09 1.86 -0.06 0.58 0.53 1.21 0.22
Bra037906 (SBT3.8)
 - - - - -0.01 -1.01 -2.58 - - - -3.25 -2.95 -3.13 - -1.88 -3.07 - -3.4 - - -0.68 - 2.59 1.66 1.76 1.01 1.59 2.12 1.34 0.53 0.99
Bra038906 (FER)
 -0.65 -0.82 -1.23 0.08 0.06 -0.28 -1.14 -0.77 -0.97 -0.78 -0.98 -0.91 -0.45 0.14 -0.17 -0.54 -1.21 0.23 -0.76 -0.89 -1.0 -1.27 0.54 0.25 0.32 2.28 0.31 0.53 0.69 0.82 0.49

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.