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Heatmap: Cluster_184 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000419 (AGP16)
 342.59 323.18 540.38 442.28 300.49 55.13 105.91 334.0 226.64 307.61 304.11 395.87 220.18 63.75 43.75 117.99 112.74 130.18 96.79 182.29 206.97 198.42 134.69 259.37 287.31 780.27 419.76 512.93 370.28 727.66 265.21
Bra001168 (AIF1)
 0.12 0.06 0.56 0.21 0.16 0.02 0.39 0.28 0.54 0.71 0.86 0.5 1.37 0.15 0.19 1.45 0.6 0.6 0.62 1.79 1.11 0.48 1.06 2.3 2.67 4.34 3.0 0.72 1.16 3.19 2.82
0.21 0.23 0.22 0.83 0.63 0.25 1.29 0.72 1.06 1.18 1.29 1.1 1.72 1.19 0.6 1.45 0.91 0.61 0.85 1.27 0.56 0.56 1.23 1.05 1.37 5.73 1.52 1.62 1.95 1.73 1.4
Bra002567 (ORP3C)
 0.04 0.02 0.04 0.02 0.03 0.06 0.0 2.46 0.06 3.86 3.14 0.07 0.94 1.0 0.08 2.43 3.25 0.09 2.47 3.49 1.79 2.94 4.66 7.33 9.85 6.62 9.74 5.37 15.2 10.97 9.56
Bra003194 (BME3)
 4.69 5.23 7.23 12.5 14.03 7.89 6.18 8.68 6.76 7.5 8.7 6.55 7.85 13.23 7.29 8.38 6.45 18.31 5.38 7.86 6.66 5.76 20.0 12.08 13.23 59.32 10.7 10.53 12.29 17.22 8.01
Bra003274 (ZRK2)
 0.75 0.47 3.42 0.42 2.29 0.84 5.13 0.0 0.27 0.01 0.0 0.0 0.0 0.06 0.0 0.09 0.0 0.06 0.3 0.0 0.0 0.0 3.87 10.75 9.2 15.11 8.37 11.42 14.02 5.98 6.41
Bra004621 (WIH2)
 19.41 15.15 17.54 25.68 8.7 5.77 13.06 16.18 4.51 18.29 14.01 11.9 12.14 11.11 6.55 10.02 14.78 17.83 10.45 15.81 11.22 11.62 5.53 31.27 37.52 57.52 35.03 33.39 37.27 31.39 19.99
Bra005100 (KTF1)
 0.13 0.0 0.0 0.0 0.02 0.02 0.0 0.0 0.0 0.0 0.0 0.0 0.05 0.0 0.0 0.07 0.0 0.1 0.05 0.02 0.0 0.02 8.46 3.98 4.38 8.08 6.15 5.83 3.06 4.58 2.9
Bra006220 (XTH5)
 0.13 0.05 0.06 0.17 0.0 0.22 2.09 6.42 3.09 3.82 6.18 3.16 2.31 0.61 0.56 2.25 3.24 0.54 1.01 3.08 3.96 2.44 2.34 5.26 9.47 12.37 9.51 2.73 9.94 14.77 10.28
Bra007009 (TRM19)
 0.11 0.11 0.05 0.24 0.27 0.26 0.19 0.89 0.32 0.58 0.14 0.69 0.73 0.44 0.69 0.25 0.42 0.68 0.16 0.47 0.18 0.23 1.84 1.25 1.04 3.15 0.96 1.45 1.7 1.59 1.29
Bra009510 (LMI1)
 0.05 0.0 0.0 0.0 0.0 0.05 0.0 0.0 0.0 0.09 0.0 0.0 0.04 0.0 0.11 0.04 0.0 0.15 0.0 0.0 0.0 0.0 0.43 0.23 0.16 1.07 0.25 0.36 0.27 0.33 0.89
2.05 1.96 1.9 3.8 5.93 4.54 2.96 2.8 2.61 3.21 2.59 2.96 4.6 5.43 5.01 3.65 3.37 6.5 3.34 3.12 2.63 2.9 6.14 4.13 4.07 21.48 3.72 3.7 4.39 4.34 4.51
Bra009779 (GLR1.4)
 0.01 0.0 0.0 0.03 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.51 5.92 8.55 31.22 11.65 1.17 3.32 7.24 10.39
Bra010187 (UBP11)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra010678 (CYP96A11)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.32 0.32 0.38 1.53 0.42 0.21 0.48 0.66 0.83
Bra010827 (SAUR61)
 4.52 2.67 3.14 5.12 4.17 1.35 3.59 3.44 5.94 2.82 8.43 5.03 3.84 1.22 0.81 2.72 3.03 1.63 2.11 4.26 3.74 3.78 1.46 3.73 5.93 8.38 5.02 4.82 4.0 5.38 6.35
9.28 6.77 6.59 9.63 8.63 4.64 4.67 5.42 7.17 8.18 10.29 9.07 13.18 7.36 3.68 7.9 7.25 9.1 5.79 6.16 6.95 5.7 12.46 8.22 10.18 22.99 9.77 9.66 12.36 12.46 10.14
Bra011585 (PIP3)
 146.8 186.13 184.16 228.44 78.91 75.16 94.08 120.53 64.7 88.33 94.63 87.21 139.54 74.93 68.87 81.94 96.05 76.31 59.35 81.3 84.72 77.08 92.04 161.38 186.27 484.46 198.15 142.01 179.0 211.95 201.1
5.77 5.47 4.56 7.25 4.31 12.36 10.69 6.93 8.74 7.39 9.21 7.32 6.87 9.16 10.42 11.7 8.52 3.87 10.15 13.17 9.92 10.55 5.23 11.58 12.92 32.35 10.15 8.83 12.39 8.63 11.01
Bra012220 (RLP50)
 0.19 0.32 0.76 0.28 0.08 0.25 0.23 0.64 0.23 1.81 1.99 1.0 0.56 0.81 1.05 0.75 0.68 2.0 0.2 0.19 0.35 0.09 4.93 3.02 3.08 7.28 3.45 2.7 3.05 4.76 5.22
2.04 2.47 2.87 3.23 1.61 0.8 1.12 1.79 1.85 4.26 3.85 2.87 3.96 0.98 0.77 2.37 1.93 1.44 0.47 1.4 1.94 2.18 1.55 3.36 4.43 7.38 4.79 2.48 2.75 5.3 6.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.08 0.02 0.0 0.02 0.02 0.06
Bra012743 (RR2)
 2.5 2.5 1.67 2.81 3.0 1.26 0.79 1.71 1.04 0.85 0.54 0.8 1.64 1.08 0.88 0.9 0.95 2.46 0.46 0.74 0.54 0.39 2.3 3.17 3.68 9.64 3.36 4.31 6.14 4.7 3.66
7.5 8.72 16.1 12.81 14.61 10.9 7.29 9.67 5.39 6.55 6.35 6.1 14.65 11.41 8.73 6.13 8.33 11.65 5.89 5.89 7.21 5.32 20.73 14.45 14.56 44.26 11.95 19.97 22.44 22.52 15.16
4.73 5.61 8.02 7.2 3.37 3.95 4.88 6.36 9.28 8.39 11.02 12.33 8.06 7.33 6.23 5.91 8.12 5.95 5.89 6.5 7.99 9.8 6.06 9.23 8.76 27.11 10.2 8.62 11.3 13.35 10.26
Bra015386 (ELMO2)
 1.28 1.28 1.56 0.97 3.38 2.34 1.12 0.81 1.01 0.71 1.7 1.26 0.92 3.72 4.12 1.15 0.95 4.33 1.67 0.65 1.34 0.56 7.34 12.71 9.75 19.24 8.19 11.28 10.77 6.87 7.51
Bra016494 (TCS1)
 4.15 5.07 3.62 6.49 4.12 6.48 4.04 3.95 4.02 4.85 4.86 4.15 6.33 8.64 6.73 5.1 5.37 6.52 5.63 4.07 4.45 4.69 5.62 4.84 4.46 19.61 4.38 5.85 5.52 4.0 3.55
3.18 2.79 4.36 10.37 15.27 9.36 5.38 6.95 4.41 6.74 6.65 5.06 9.72 18.34 14.06 6.31 7.7 12.92 5.39 6.25 6.49 7.67 26.2 8.05 9.53 83.95 8.08 8.99 15.93 19.86 6.63
Bra016683 (PAP3)
 116.29 83.35 84.13 194.2 26.83 77.64 170.87 202.53 205.65 171.73 184.85 205.14 220.43 36.7 28.02 140.51 156.97 35.27 94.24 136.11 181.49 171.96 111.17 170.39 180.75 264.21 168.45 123.15 147.31 155.99 178.5
0.96 1.91 1.88 1.11 0.36 0.35 0.09 0.06 0.11 0.1 0.18 0.37 0.0 0.18 0.16 0.0 0.0 0.36 0.0 0.0 0.63 0.0 0.7 2.24 1.59 15.77 1.64 2.5 3.11 5.77 4.16
Bra016888 (CYP712A1)
 0.13 0.04 0.18 0.18 0.19 0.11 0.13 0.19 0.29 0.44 0.36 0.36 0.13 0.12 0.3 0.31 0.24 0.14 0.3 0.25 0.33 0.28 0.48 1.32 0.91 2.31 0.74 1.59 1.32 0.8 0.35
7.58 11.89 10.36 12.67 12.81 9.81 5.93 9.13 11.51 7.83 10.51 8.18 9.52 11.56 10.37 9.69 7.5 8.75 8.21 9.54 7.79 9.5 25.56 23.0 22.11 38.8 22.85 21.49 23.23 23.57 21.07
Bra018387 (DWF2)
 5.09 5.91 7.86 21.74 8.4 1.83 5.38 5.51 2.0 4.52 4.7 3.73 5.61 3.05 0.0 13.53 4.66 8.37 6.14 5.47 4.51 9.06 9.99 29.66 29.62 89.08 51.75 28.36 35.57 51.51 39.63
Bra018951 (J2)
 0.0 0.01 0.16 1.03 0.02 0.2 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.44 1.84 2.6 3.98 2.24 1.96 2.34 2.0 1.97
Bra019554 (MSS3)
 8.22 4.97 10.03 34.08 30.38 18.1 12.81 12.26 13.33 15.85 12.08 15.7 13.95 41.51 25.14 18.44 14.89 30.98 16.43 13.8 15.19 15.98 18.72 24.37 21.15 107.54 21.5 27.88 32.06 24.25 10.35
0.0 0.01 0.01 0.01 0.0 0.02 0.02 0.01 0.13 0.05 0.04 0.05 0.08 0.04 0.01 0.07 0.06 0.05 0.03 0.08 0.03 0.05 0.33 0.25 0.54 0.95 0.79 0.15 0.93 0.98 1.33
Bra023656 (SAUR21)
 0.31 3.14 3.38 2.04 0.3 0.41 0.0 0.26 1.21 1.52 0.75 0.16 0.52 0.0 0.0 0.0 0.59 0.14 0.52 1.13 0.16 2.17 0.5 16.41 17.61 39.39 16.29 15.81 15.04 22.94 8.0
8.85 6.97 8.13 8.86 9.69 3.54 5.33 7.02 8.3 8.29 10.63 13.82 5.58 2.45 2.68 4.63 4.47 3.93 4.26 6.28 8.46 7.1 5.31 10.19 10.62 18.26 11.75 10.74 11.36 12.67 10.84
Bra024672 (KDR)
 14.89 21.65 33.7 27.51 14.9 8.74 28.53 31.09 29.28 38.86 51.15 45.19 31.33 5.94 3.94 27.16 30.53 13.09 23.52 29.99 33.72 37.95 21.88 45.02 52.65 71.41 51.93 33.16 33.23 33.78 38.74
1.67 1.12 2.06 2.71 1.52 1.49 1.01 1.65 1.75 1.36 2.45 1.2 1.2 2.78 1.45 1.49 1.56 1.76 0.97 1.51 0.77 1.34 5.69 3.16 3.22 6.72 2.92 3.24 4.32 4.55 3.73
Bra026616 (IME)
 0.05 0.17 0.11 0.09 0.27 0.23 0.17 0.12 0.17 0.18 0.17 0.19 0.23 0.21 0.12 0.12 0.17 0.21 0.29 0.18 0.09 0.1 1.31 1.22 0.82 0.98 0.93 1.4 0.95 0.68 0.55
Bra026669 (PIN4)
 6.19 7.02 10.3 6.45 9.72 4.17 4.77 5.87 8.66 10.37 11.44 9.93 9.05 5.32 4.95 6.88 6.09 8.42 4.04 8.54 7.94 7.78 10.92 7.73 8.99 23.58 10.03 6.33 11.24 9.03 7.07
0.49 0.11 0.06 0.08 0.76 0.64 0.35 0.3 0.55 0.32 0.83 0.73 0.82 0.59 1.0 1.01 0.34 1.05 0.89 1.05 0.78 0.47 3.65 1.5 1.33 7.72 1.37 2.07 2.05 1.1 0.28
Bra027045 (AFB5)
 0.17 0.15 0.15 0.11 0.25 0.23 0.06 0.03 0.08 0.17 0.1 0.22 0.29 0.22 0.2 0.18 0.26 0.23 0.13 0.03 0.02 0.12 0.44 0.31 0.28 1.43 0.32 0.29 0.49 0.39 0.41
0.98 1.33 2.03 2.81 1.21 1.59 1.08 2.83 3.07 2.44 3.3 1.84 4.84 4.38 3.53 1.7 1.95 1.91 3.68 2.43 4.24 2.93 9.41 7.52 5.74 17.54 5.32 7.76 8.96 8.28 4.91
Bra027763 (ASD2)
 4.72 6.3 4.6 8.82 4.83 5.78 3.56 4.27 3.87 5.28 4.59 5.0 4.95 7.44 6.37 5.54 7.03 6.58 4.23 4.96 4.47 5.16 4.59 5.12 4.6 17.73 4.3 5.87 5.75 5.73 4.45
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.29 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.94 0.12 0.0 0.22 0.21 0.44
Bra031036 (GAUT11)
 0.37 0.0 0.0 0.0 0.53 0.25 0.0 0.0 0.53 0.0 0.22 0.0 0.52 0.0 0.0 0.0 0.65 0.0 0.54 2.77 0.0 1.07 1.19 2.18 2.01 7.85 5.35 0.9 3.2 4.84 10.42
7.74 6.9 8.33 9.64 5.26 2.61 1.77 2.24 3.67 3.5 3.58 4.43 3.74 1.96 1.43 2.0 1.87 7.03 3.24 3.6 1.88 1.18 9.43 6.22 3.71 19.57 4.37 3.42 5.61 14.27 6.98
Bra032161 (MES6)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.03 0.0 0.02 0.0 0.05 0.16 0.04 0.0 0.03 0.0 0.1
Bra034182 (AOP)
 0.12 0.17 0.23 0.48 0.38 0.59 0.35 0.74 0.4 0.63 0.55 0.41 0.57 1.2 0.75 0.76 0.58 0.65 0.45 0.5 0.68 0.38 0.99 0.64 0.55 2.79 0.52 0.91 0.96 1.21 0.89
Bra034298 (FDH)
 43.39 47.29 50.99 68.01 57.2 34.26 37.73 43.64 55.96 55.16 54.03 48.96 52.93 60.27 45.42 54.72 50.56 56.23 37.89 45.31 47.31 47.1 54.14 46.9 53.94 103.98 58.79 58.7 69.31 60.38 54.18
Bra034870 (MSS3)
 8.22 4.97 10.03 34.08 30.38 18.1 12.81 12.26 13.33 15.85 12.08 15.7 13.95 41.51 25.14 18.44 14.89 30.98 16.43 13.8 15.19 15.98 18.72 24.37 21.15 107.54 21.5 27.88 32.06 24.25 10.35
Bra035321 (eIFiso4G2)
 0.0 0.07 0.0 0.05 0.23 0.12 0.05 0.05 0.17 0.29 0.16 0.44 0.0 0.66 0.34 0.07 0.25 0.06 0.26 0.31 0.24 0.13 5.39 2.83 3.5 5.5 1.69 3.17 3.71 4.54 3.35
Bra035613 (PEX5)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.08 36.36 31.19 28.87 89.16 40.14 26.19 34.74 45.58 45.19
Bra036536 (ESE3)
 1.15 1.45 0.39 1.22 0.39 0.05 0.89 0.55 1.19 1.82 4.03 3.54 3.96 0.0 0.0 0.88 0.83 1.43 0.32 2.38 3.4 1.39 6.66 2.5 4.36 18.08 7.23 4.88 3.47 7.43 6.0
Bra037137 (sks17)
 8.04 9.16 8.51 10.78 5.85 9.19 10.44 12.12 9.9 9.85 13.08 12.62 14.5 12.0 9.42 12.77 11.06 9.22 10.24 14.09 13.95 14.59 9.16 17.67 19.48 53.27 22.48 11.58 15.14 15.07 17.54
Bra037583 (PUR4)
 0.28 0.27 0.25 0.32 0.63 0.42 0.2 0.52 0.34 0.52 0.27 0.4 0.32 0.68 0.84 0.64 0.49 0.47 0.37 0.44 0.45 0.35 2.17 1.29 1.42 2.54 1.37 1.05 1.32 1.63 1.62
Bra037722 (MSS3)
 8.22 4.97 10.03 34.08 30.38 18.1 12.81 12.26 13.33 15.85 12.08 15.7 13.95 41.51 25.14 18.44 14.89 30.98 16.43 13.8 15.19 15.98 18.72 24.37 21.15 107.54 21.5 27.88 32.06 24.25 10.35
Bra037833 (PUB31)
 1.14 1.27 2.19 1.93 0.92 0.6 0.39 0.62 0.75 0.58 0.91 0.65 1.91 0.59 0.42 0.77 0.47 1.27 0.54 0.65 0.62 0.74 2.12 1.18 1.31 4.44 1.18 1.84 1.77 2.84 1.43
Bra037906 (SBT3.8)
 0.0 0.0 0.0 0.0 0.04 0.02 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.0 0.02 0.0 0.22 0.12 0.13 0.07 0.11 0.16 0.09 0.05 0.07
Bra038906 (FER)
 2.41 2.15 1.61 4.0 3.95 3.12 1.71 2.22 1.93 2.21 1.93 2.01 2.78 4.16 3.36 2.61 1.63 4.44 2.23 2.04 1.9 1.57 5.52 4.52 4.72 18.42 4.7 5.47 6.12 6.68 5.32

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)