Heatmap: Cluster_87 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_0_32861.1 (LecRK-IV.4)	-	-	-	-	-	-	-	-	-	3.3	-	-	-	2.52	-	-	2.59	-	-	-	-	-	-	-	-	-	-	-	-	3.23	-
Lsat_1_v5_gn_0_34981.1	-0.06	-0.14	0.77	-0.22	-	-	-	-	-	-2.94	-	-	-	1.94	-0.95	-	1.44	-	1.56	1.04	1.44	-0.06	-	-	-	1.43	-	1.26	2.23	-0.15	-
Lsat_1_v5_gn_0_5041.1	-	-	-	-	-	-	-	-	-	4.07	-	-	-	-	-	-	-	-	-	-	-	-	-	3.83	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_109081.1 (FEI2)	-	-	-	-	-	-	1.93	-	-	0.5	1.55	-	-	1.9	1.65	-	-	0.44	0.47	0.43	-	-	-	-	-	2.55	-	-	2.22	0.42	-
Lsat_1_v5_gn_1_112481.1	-1.1	0.94	-1.15	0.42	1.11	-1.5	-	-	-	0.4	-	-1.44	0.5	1.56	0.43	-3.63	1.68	-	0.04	0.57	-0.49	-1.34	0.98	-	-	-	0.69	-	1.18	-	2.06
Lsat_1_v5_gn_1_28160.1 (UVSSA)	-	-	-	-	-	-	-	-	-	3.36	2.72	-	-	-	-	-	-	1.02	-	-	0.93	-	-	1.99	-	-	1.88	-	-	1.34	-
Lsat_1_v5_gn_1_70380.1 (HIL1)	-0.06	-0.77	-1.83	1.15	-1.38	0.86	-2.13	-0.16	-0.12	0.57	1.17	-2.15	-0.73	-0.25	-0.24	-0.69	0.64	1.01	-0.38	-1.15	-0.23	-1.74	-0.49	-0.53	-0.44	0.51	-0.28	-	1.04	-0.01	1.29
Lsat_1_v5_gn_1_76201.1 (VC2)	-	-	-	-	-	-0.11	-	0.16	1.17	2.53	-	1.64	-	-	-	0.46	2.72	-	-	-0.2	-	-	-	-	-0.0	-	0.14	1.07	-	-0.11	1.95
Lsat_1_v5_gn_1_97200.1	-	-	-	-	-0.11	-0.16	-	-	-	1.95	2.02	0.88	0.3	0.17	-	0.48	0.91	-	-	-	-	0.98	1.6	-0.14	-	0.67	0.12	-	-	-	2.38
Lsat_1_v5_gn_2_129620.1	-	-	-	-	3.81	-	-	-	-	4.08	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_2401.1	-	-	-	-	0.83	0.28	0.44	0.55	-0.38	1.73	-	-	-	-	-	-0.1	-	-	-	0.83	1.19	-0.52	-	2.46	-0.63	-	-	-	2.22	1.48	0.84
Lsat_1_v5_gn_2_64901.1 (ALA5)	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_74580.1 (HNL)	-	-	-	-	-	1.82	-0.34	-	-	2.42	-	-	-0.47	-0.34	1.28	-0.34	-0.3	0.35	-0.7	0.97	-0.71	0.46	-	1.7	-	-	-	-	-0.48	1.13	1.92
Lsat_1_v5_gn_2_77720.1 (MET2)	-	-	-0.04	-	-0.03	-	0.71	1.71	-1.18	-	-	-	-1.08	1.32	-0.18	-	-1.31	0.54	1.19	0.14	-1.56	-0.06	-0.86	-0.36	-1.32	1.53	-0.15	-	1.3	-1.44	2.31
Lsat_1_v5_gn_2_92080.1 (RPOA)	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_137921.1 (TPR3)	0.39	-	-	0.86	0.29	-0.94	-	0.71	0.95	-	0.82	-0.96	-	0.41	-	-	0.92	-	0.97	0.84	0.45	-	0.55	-	0.56	-	0.25	0.66	2.21	-0.72	-0.01
Lsat_1_v5_gn_3_36780.1	-	-	-	-	-	-	2.73	-	-	3.53	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.68	-	-	-
Lsat_1_v5_gn_4_112601.1 (SOT7)	-	-	-	-	-	-	-	-	-	4.39	-	-	-	-	-	-	-	-	-	-	-	3.33	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_28220.1	1.41	-	-	-	-	-	0.7	-	-	-	0.62	-	-	2.43	-4.13	-	-	-	0.14	-	2.33	-	0.11	1.18	-	-	-	-	2.83	1.65	-13.06
Lsat_1_v5_gn_4_40720.1	-	-	-	-	-	-	-	-	-	4.3	-	3.49	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_53361.1	-	-	-	-	-	-	2.18	-	-	3.62	-	-	-	2.45	2.2	-	-	-	-	-	-	-	-	-	2.05	-	-	-	-	-	-
Lsat_1_v5_gn_5_130560.1 (RABG3c)	-1.16	-	-1.33	-	-	0.33	-1.48	-	-0.2	-0.1	1.29	0.83	1.48	0.16	-1.48	0.43	-0.75	0.18	-0.23	0.19	-1.83	-	0.4	0.28	-	-0.91	-	0.21	1.55	0.77	2.02
Lsat_1_v5_gn_5_1361.1 (ARF16)	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_139640.1 (MOS7)	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_149700.1 (IEF)	-	-	-	-	-	-	-	3.68	-	4.18	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_191400.1	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_21081.1 (TPS1)	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_3681.1	-	-	-	-	-	-	-	-	-	3.43	-	1.39	-	2.7	-	-	3.11	-	-	-	-	-	1.34	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_77300.1 (SMU2)	-	-	0.24	0.55	1.04	0.81	-	1.11	1.27	-1.49	0.63	0.7	-0.27	-0.16	-0.23	-	1.13	-	-	-0.52	1.03	-	-	-1.52	-0.46	-0.43	1.08	0.49	0.62	1.07	-
Lsat_1_v5_gn_5_84821.1 (ERF1-2)	-	-	-	0.25	-1.09	-1.16	-	1.1	0.57	1.86	-	0.44	-0.04	-	0.69	0.06	1.06	-0.17	0.85	-1.3	-	0.18	0.39	-1.23	0.92	-	0.8	-1.08	0.56	-0.01	1.01
Lsat_1_v5_gn_5_87481.1 (FEI1)	-	-0.27	-	-	0.32	-	2.16	-0.35	0.41	-	-	-0.34	-	0.87	0.7	-	-0.63	0.88	1.99	-	-	1.35	-	0.46	-	0.35	-0.29	-0.77	1.01	-	1.59
Lsat_1_v5_gn_5_99060.1 (PAM16L)	-	0.5	0.7	-0.27	-0.04	-0.26	-2.24	0.19	1.38	-1.1	0.73	-0.3	-	1.07	1.26	-0.92	-0.03	-	-0.75	0.77	0.64	0.16	-0.13	-	-1.28	0.01	-1.0	0.45	-0.18	1.26	-
Lsat_1_v5_gn_6_107740.1 (CNA)	-1.07	-0.47	-0.7	-0.89	0.26	-0.32	-2.12	-4.01	-3.56	0.69	-2.16	0.43	0.45	1.08	0.79	-2.27	-0.19	-0.96	-1.22	0.8	-2.3	-1.66	0.91	-0.99	-1.49	1.19	-0.59	-1.0	1.35	0.64	1.72
Lsat_1_v5_gn_6_115341.1 (TMN11)	-	-	-	0.37	-0.94	-0.9	-	0.23	-	2.61	-0.87	-1.15	1.49	-0.79	-0.8	-0.83	0.04	0.94	-	-1.17	0.8	0.18	-	0.92	-	1.38	-	1.26	1.43	-	-
Lsat_1_v5_gn_6_14921.1	-	-	-	-	-	0.62	-	-	-	1.47	-	1.54	0.96	1.64	1.48	1.03	-0.27	-	-0.52	-	0.46	-	1.69	-	-	0.69	-	-	0.78	1.52	0.65
Lsat_1_v5_gn_6_40160.1 (PIP5K7)	0.59	-	-	-	0.86	-1.39	-1.49	-	-	1.5	0.61	0.01	-0.37	0.36	-	-	0.21	0.12	-	-0.53	-	-1.39	0.9	1.13	-0.46	0.83	-	-	1.83	0.4	2.26
Lsat_1_v5_gn_6_57441.1	-	1.07	0.11	-	-	1.46	1.85	0.77	-	-	-	-0.36	-	1.6	0.11	-	-0.08	-	-	-	-	-	-	2.18	-	-	0.22	-	-0.14	0.83	2.47
Lsat_1_v5_gn_6_85640.1	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_12640.1	0.47	0.87	-0.17	-0.22	-0.31	-1.59	-	-	-	1.14	-	0.72	-0.49	-1.2	1.45	-1.14	-0.39	-1.66	-	1.01	-0.21	-1.08	0.43	0.0	0.04	-	0.63	-1.48	-0.65	1.77	1.56
Lsat_1_v5_gn_7_22820.1	-0.39	-1.01	-0.45	-2.03	0.19	0.65	0.94	-0.61	0.95	1.12	-0.97	-2.09	0.36	0.78	0.1	0.24	0.39	-	-0.14	-1.18	-2.25	-0.4	0.38	0.11	0.66	-2.44	0.1	-0.77	-1.15	1.33	-0.03
Lsat_1_v5_gn_7_29700.1	-	-	-	-	-	-	1.14	0.18	-	-	1.76	-	0.16	-	-	2.09	0.05	-	-	0.1	1.12	-	-	2.15	-	-	-	-	1.87	1.09	2.14
Lsat_1_v5_gn_7_56560.1	-	-	-	-	-	2.81	-	-	-	3.98	-	-	-	-	-	-	-	-	3.04	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_78700.1	-	-	1.65	-	-	-	-	-	-	4.67	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.26	-	-	-	-	-	-
Lsat_1_v5_gn_7_87221.1 (GLDP2)	1.51	-	0.47	-	-	2.14	-	0.03	0.27	0.03	1.23	1.04	0.14	1.21	1.3	-	-0.05	-	-	-	-0.1	0.4	-	1.57	-	-	-	0.16	-	-	0.6
Lsat_1_v5_gn_7_9780.1	-0.11	-1.12	-	0.82	1.52	-	-0.24	-	-0.36	1.49	-1.27	1.97	1.43	1.42	0.89	-1.1	-1.34	-1.39	1.34	-	-0.5	-	-	0.61	-	-1.3	-	-0.25	-1.29	-0.35	-0.85
Lsat_1_v5_gn_8_105080.1 (SNC4)	0.83	-0.89	1.07	-0.53	-0.22	-1.27	0.01	0.35	-0.98	0.06	0.46	0.38	-0.25	-0.09	1.13	0.52	-1.25	0.75	-0.41	-0.69	-1.04	0.32	0.25	-1.3	-1.89	-1.84	-0.04	0.15	0.64	0.59	-2.38
Lsat_1_v5_gn_8_110681.1 (LAF3)	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_15520.1 (MRL7-L)	-	0.31	-	1.8	-	0.0	-0.09	-	-	2.69	-	-	0.23	-	-	0.11	-	-	0.9	1.76	0.78	-	-	-	2.18	-	-0.24	0.96	-	-	0.42
Lsat_1_v5_gn_8_29581.1	-	-	-	-	0.89	-0.74	-	-0.81	-	0.22	-	0.14	0.39	2.26	2.01	-	0.99	0.22	-	0.78	-0.87	-	1.63	-	-	-	-0.46	-	1.73	-	1.59
Lsat_1_v5_gn_8_35301.1	0.81	-1.8	-0.28	0.4	0.75	-0.32	-1.16	-0.17	-1.53	-0.46	1.15	0.83	-0.81	0.73	0.17	-0.03	-1.33	-2.21	-	0.58	0.33	-	0.01	0.82	-	-2.08	0.39	-	1.37	0.97	0.43
Lsat_1_v5_gn_8_70761.1	-	-	-0.45	-0.55	-	0.92	1.37	-	1.99	2.35	-	-0.75	-	-	1.53	-	0.47	-	-0.83	-0.74	-0.8	-	-	-	1.34	1.11	1.37	1.12	-	-	-
Lsat_1_v5_gn_9_123340.1	-	-	-	-	3.03	-	-	-	-	3.92	-	-	-	-	-	-	-	-	2.95	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_31461.1 (RLK1)	-	-	-	-	-	-	-	-	-	4.22	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.63	-
Lsat_1_v5_gn_9_35760.1 (FtsHi5)	-	1.25	1.13	-	-	-	-	-	-	-	1.58	0.65	-	-	0.52	-	-0.93	1.75	-	1.03	-	-	0.24	-	0.14	2.36	-	-	1.99	0.48	0.78
Lsat_1_v5_gn_9_35960.1	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_85781.1	-2.52	-1.48	-0.85	-2.59	1.04	-0.07	-	-1.43	-	0.11	-0.65	-0.9	0.97	1.49	1.15	-2.47	-0.1	0.9	0.11	0.04	-1.05	-	0.43	-0.97	-4.55	0.19	0.48	-1.99	0.97	0.88	1.63

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.