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Heatmap: Cluster_276 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000403 (PMM)
 4.9 6.15 4.91 5.42 8.46 6.66 10.81 11.27 4.58 8.69 5.23 7.28 10.8 4.84 4.31 9.46 15.61 7.2 5.13 7.39 10.07 9.6 15.42 13.61 15.75 12.26 15.4 12.26 8.9 11.15 13.07
Bra001131 (CYSD1)
 0.48 0.2 0.31 0.19 1.49 3.25 0.85 1.66 1.28 1.07 1.6 0.67 3.32 6.26 5.94 2.46 1.97 4.15 2.66 1.37 1.27 1.04 6.44 6.3 5.81 3.68 5.48 5.73 8.52 7.45 10.63
Bra002877 (CRR21)
 3.63 1.54 2.25 3.4 3.2 2.16 4.96 3.79 2.45 3.44 3.44 3.66 5.15 2.03 2.69 4.17 5.25 2.79 3.59 3.71 3.07 2.35 2.75 4.04 3.76 4.25 3.91 4.82 3.41 3.58 5.62
Bra003045 (PLR1)
 21.03 17.98 20.48 20.28 31.84 39.7 42.12 43.71 27.71 41.06 31.45 29.63 30.56 29.2 37.43 41.64 27.05 25.29 36.32 44.04 30.8 28.28 27.81 41.44 43.8 38.64 41.28 43.24 46.33 39.74 50.16
Bra003788 (QKY)
 1.73 1.23 1.23 0.94 2.46 1.87 2.7 4.03 1.99 1.64 2.24 2.64 3.43 2.93 3.22 2.59 2.77 2.37 1.84 2.16 2.49 2.05 3.38 3.81 3.44 2.16 3.9 2.92 3.18 3.13 4.25
Bra003833 (alpha-DOX2)
 4.04 2.39 1.98 3.14 6.69 11.59 9.43 10.04 9.8 8.86 8.24 9.28 9.68 9.23 8.89 11.65 11.6 5.93 10.22 11.0 10.79 8.51 6.69 11.49 11.85 9.93 11.58 11.06 12.74 10.58 13.94
0.21 0.47 0.25 0.19 0.47 0.87 0.4 0.4 1.69 0.69 1.02 0.78 1.12 3.68 2.05 0.99 2.21 1.17 0.93 0.75 0.35 0.87 2.55 3.15 3.13 3.12 3.43 3.52 5.73 5.36 6.18
Bra004001 (CM3)
 2.36 1.34 1.19 1.19 3.65 2.09 2.8 1.4 2.85 4.45 2.19 2.96 3.04 3.61 2.07 4.61 4.09 1.46 3.54 3.93 1.76 1.75 1.88 8.6 8.73 6.65 7.08 4.21 6.07 7.7 11.8
Bra004144 (HKL)
 0.12 0.75 0.65 1.05 3.06 2.37 1.99 2.79 0.89 0.98 1.05 1.2 3.96 2.89 3.38 2.46 1.89 1.59 2.43 1.29 2.41 1.96 3.85 5.01 3.09 2.96 4.31 3.52 3.51 3.1 3.89
Bra004318 (CRF10)
 6.54 5.57 6.54 5.32 10.08 9.17 6.52 9.58 3.86 6.08 5.83 5.11 11.39 10.86 11.97 10.33 9.36 12.58 7.5 4.94 6.43 4.48 13.9 16.88 17.01 13.77 17.49 15.92 17.59 15.19 23.04
Bra004378 (ARC12)
 51.06 44.62 46.34 52.42 64.74 60.19 71.41 64.06 69.04 82.13 80.73 79.44 70.07 66.21 67.6 78.35 81.12 54.73 72.27 82.65 74.15 77.88 51.96 104.35 100.53 93.64 98.02 104.64 89.18 97.2 108.43
22.74 18.35 25.48 25.22 24.99 24.64 33.37 30.54 17.95 23.79 22.5 23.81 29.09 17.16 18.36 30.4 29.69 20.24 24.48 28.47 18.98 18.42 19.01 34.22 34.34 32.89 29.32 44.87 32.22 25.31 31.27
Bra005386 (PSA2)
 13.73 12.13 10.25 14.1 25.46 32.7 14.48 39.16 17.43 34.78 29.9 13.28 29.62 16.99 34.0 34.52 30.96 18.14 21.94 26.94 19.89 29.4 14.37 38.35 39.25 31.39 40.48 47.75 38.36 34.43 48.23
Bra006200 (ATP5)
 8.29 11.51 10.91 9.68 16.63 12.09 15.22 16.2 9.93 15.3 7.46 10.28 18.12 12.07 11.22 12.56 15.28 19.1 10.6 17.87 13.46 12.12 35.57 25.16 25.52 23.52 25.8 25.08 16.93 18.44 15.86
Bra006838 (LUT2)
 22.62 15.14 18.46 27.83 35.37 33.24 41.98 39.78 38.02 43.21 40.58 39.65 38.67 27.65 24.8 42.15 49.28 19.53 35.88 38.76 35.28 38.36 12.19 44.33 47.01 40.3 41.89 45.65 56.59 44.42 47.62
0.44 0.17 0.5 0.42 1.53 1.32 0.82 0.88 1.16 1.11 0.96 0.68 1.53 2.12 1.59 1.09 1.07 1.47 1.1 0.64 0.72 0.8 1.98 1.95 2.29 2.27 1.85 2.12 3.87 2.44 2.88
4.68 3.73 4.96 3.66 4.08 5.52 6.97 8.99 5.49 4.13 7.85 6.14 8.57 4.75 7.41 7.6 7.71 7.42 5.55 6.7 5.21 7.39 2.97 5.37 6.52 6.07 6.84 5.6 7.0 7.58 8.16
Bra007201 (PLC7)
 0.0 0.1 0.08 0.03 0.0 0.13 0.2 0.34 0.31 0.68 0.49 0.45 0.32 0.33 0.67 0.36 0.28 0.33 0.38 0.37 0.18 0.37 0.36 0.31 0.18 0.16 0.19 0.32 0.28 0.26 0.25
8.02 10.43 8.64 6.53 13.27 13.11 16.81 22.28 16.24 12.27 14.3 14.01 22.88 20.7 20.76 15.65 15.44 15.19 15.03 14.56 14.42 19.76 18.17 20.73 20.95 19.54 22.03 21.26 21.73 19.5 26.8
Bra007566 (ARP7)
 0.34 0.44 0.39 0.42 0.38 0.63 1.16 1.66 1.02 1.5 1.6 1.78 1.22 1.77 0.99 1.5 2.21 1.35 1.66 1.5 1.23 1.1 2.66 1.76 1.97 1.97 1.63 1.58 1.81 1.49 2.45
15.72 9.36 8.75 11.4 23.19 29.13 25.55 20.65 22.93 34.26 27.71 21.29 36.92 26.49 39.59 37.54 35.74 28.96 21.02 35.85 32.08 47.09 51.67 43.27 46.98 38.13 51.92 19.79 17.79 30.29 48.49
9.18 9.28 9.61 7.39 9.91 5.98 10.3 9.32 6.56 10.6 8.41 6.71 15.96 4.22 4.02 13.69 15.3 17.35 6.3 8.58 9.65 9.3 8.68 14.36 12.75 15.61 13.04 16.14 14.56 12.33 17.74
51.95 69.96 52.82 65.67 58.65 256.76 367.53 231.69 131.65 180.59 188.3 139.76 187.31 199.38 245.53 367.2 345.91 64.89 270.42 413.79 327.96 298.82 188.66 321.6 352.98 319.39 291.12 194.62 279.19 110.32 290.0
Bra011437 (SPPL1)
 1.09 0.25 0.91 0.6 0.7 1.94 1.15 2.42 1.82 2.16 2.43 2.66 1.62 2.4 3.46 1.67 1.76 2.74 1.94 1.95 1.83 2.25 3.09 2.32 1.62 2.18 1.93 2.92 2.35 2.15 2.02
Bra012451 (CLE9)
 0.95 1.18 1.43 1.06 4.18 2.68 2.72 2.84 4.05 4.98 4.42 4.75 2.18 5.9 3.88 5.53 3.98 6.1 3.56 5.3 4.54 3.51 2.57 9.33 8.47 9.78 8.27 7.24 10.31 7.62 10.82
Bra014251 (SCL3)
 2.07 1.52 3.06 1.89 3.89 7.27 6.69 5.06 6.55 5.94 7.99 5.11 5.93 6.12 7.67 7.92 8.7 4.1 3.88 5.72 5.42 6.76 8.37 10.87 11.16 7.84 10.19 9.21 11.02 7.31 7.27
Bra014437 (PIP1)
 3.34 14.03 11.64 3.55 6.37 20.57 20.54 25.25 27.06 37.04 26.83 25.97 50.53 39.39 32.67 40.94 48.7 28.04 29.53 29.59 38.3 26.85 43.12 41.92 46.69 40.01 42.89 32.49 40.39 31.04 50.59
2.45 1.67 2.05 3.25 2.74 5.55 9.6 7.99 5.68 5.66 6.8 7.51 8.88 2.06 2.4 9.34 6.47 4.34 7.18 5.89 6.73 5.98 2.74 12.85 11.98 8.81 9.39 13.37 11.75 5.4 10.18
0.16 0.24 0.09 0.11 0.51 0.9 1.01 0.73 1.04 1.15 0.78 1.07 0.59 0.51 0.57 1.07 1.32 0.21 2.1 1.38 1.89 1.47 1.04 3.3 3.23 1.54 3.26 2.45 3.19 2.22 2.67
0.69 0.73 0.74 0.61 1.07 0.86 0.68 0.66 0.59 0.58 0.74 0.43 0.66 0.93 1.0 0.83 0.64 0.73 0.77 0.48 0.44 0.63 1.47 1.31 1.48 1.25 1.39 1.33 1.47 1.29 1.91
Bra016487 (APS2)
 5.45 6.01 2.3 2.48 18.38 14.7 25.37 29.08 34.79 30.5 32.89 41.3 23.91 52.62 50.95 60.09 28.61 29.31 33.39 30.95 51.92 47.59 37.67 84.44 86.1 67.07 84.57 77.17 83.64 59.89 80.16
21.18 15.32 19.12 17.41 23.47 19.74 22.39 20.18 21.65 25.25 28.72 20.89 23.82 15.88 13.93 23.37 23.8 16.21 18.34 25.36 26.17 23.37 15.54 37.43 38.24 30.14 34.04 35.2 32.17 32.88 42.2
24.61 23.05 23.07 16.33 42.4 91.66 35.91 114.83 101.81 97.18 230.73 40.4 106.26 66.18 45.68 131.51 156.23 141.2 51.32 153.13 94.34 118.12 132.72 265.43 260.48 220.47 287.99 158.39 167.74 304.24 276.79
755.55 669.62 624.64 1147.2 1102.24 1464.71 1810.52 1707.54 786.64 1068.98 1188.93 852.28 1412.59 1284.63 1088.32 1535.91 1607.34 904.77 1048.13 1822.58 1781.35 1343.83 942.51 1871.48 1941.37 1716.42 1768.78 2026.07 1447.56 1035.55 1554.78
Bra018386 (GSTU5)
 0.75 0.42 0.43 0.69 2.99 9.22 18.71 10.32 6.49 6.02 4.2 6.59 29.68 24.77 21.95 16.16 18.34 7.32 11.09 11.21 12.21 3.51 52.06 47.6 44.33 29.1 37.17 29.85 38.75 20.02 71.16
Bra018700 (mtLPD1)
 83.8 57.17 53.87 98.22 191.83 240.56 285.31 242.0 212.31 245.25 218.32 210.25 222.95 184.92 177.51 315.68 298.23 141.58 224.68 243.74 245.09 235.91 181.84 352.71 363.07 302.29 358.7 377.94 408.9 337.91 420.75
41.88 30.58 36.21 34.67 54.77 45.91 40.46 51.43 35.73 48.97 40.07 49.72 74.71 25.09 20.18 46.21 51.41 54.4 38.84 47.9 49.81 47.55 53.66 66.2 67.54 55.32 66.13 58.55 50.05 59.11 74.34
Bra019214 (PGI)
 28.85 30.23 17.29 32.06 42.05 55.26 73.29 82.1 44.78 54.44 52.57 48.11 49.74 56.31 54.51 59.61 57.03 57.58 62.59 49.36 54.66 52.1 19.66 66.49 66.47 59.62 70.62 84.27 68.18 79.48 78.02
Bra019532 (DALL2)
 0.0 0.0 0.0 0.0 0.0 0.0 12.74 12.38 13.5 2.32 30.07 18.06 20.04 18.93 26.73 23.6 14.19 13.85 7.47 26.67 7.77 16.76 12.0 18.21 10.98 5.59 5.89 15.89 25.98 21.23 23.18
1.18 1.22 1.18 0.57 2.89 3.13 2.04 3.13 2.69 3.4 3.24 3.16 3.5 4.34 4.92 2.73 2.91 3.93 3.39 3.4 2.71 2.93 5.91 7.07 5.9 5.22 5.19 6.93 7.58 7.28 7.74
1.36 1.0 1.04 0.77 2.0 5.85 5.93 5.41 3.59 3.75 3.39 3.78 6.02 2.95 4.26 4.72 6.84 1.44 3.46 4.63 4.03 4.19 2.76 6.92 7.78 4.51 5.89 6.36 6.27 2.91 6.31
Bra020355 (DDB2)
 0.64 1.14 0.93 0.88 1.75 2.5 2.37 2.75 1.4 1.51 1.3 1.09 2.56 2.55 3.0 2.53 2.6 3.3 1.99 2.67 2.06 1.7 6.66 5.57 5.77 2.87 5.37 4.54 4.89 2.51 4.72
Bra021784 (DOR)
 0.0 0.0 0.0 0.0 0.21 0.12 0.16 0.05 0.43 0.31 0.44 0.1 0.05 0.55 0.69 0.56 0.41 0.43 0.88 0.69 0.25 0.31 1.25 1.1 1.25 1.05 1.28 1.18 1.52 1.79 3.01
0.24 0.45 0.26 0.39 0.83 2.61 2.3 3.53 3.57 2.74 3.02 1.55 1.34 5.87 9.82 4.91 1.76 4.89 4.3 3.87 0.52 1.47 12.92 10.97 10.02 6.48 10.09 13.55 16.65 13.41 14.63
Bra022764 (AtHMP52)
 10.02 5.63 5.87 5.9 20.01 12.24 24.44 31.86 21.94 24.5 29.22 26.4 33.8 11.98 10.46 30.89 24.85 17.5 17.9 28.58 27.72 23.87 13.14 36.05 33.55 27.96 33.45 39.41 31.29 27.23 37.05
Bra023372 (LRP1)
 0.15 0.08 0.03 0.0 0.29 0.57 0.61 0.55 1.13 0.76 1.19 1.04 2.32 1.49 1.54 1.53 0.2 1.56 0.87 0.65 0.61 0.18 1.42 1.89 2.22 1.58 1.97 2.47 3.46 2.51 4.06
Bra023597 (ENH1)
 172.91 159.52 177.44 208.63 234.94 269.05 319.57 342.91 171.32 215.8 219.02 185.84 272.9 186.67 201.3 326.85 306.27 191.27 234.19 288.22 270.62 228.09 157.02 343.14 346.73 308.82 337.0 268.07 276.24 301.89 379.72
Bra023897 (GBP)
 9.67 10.24 12.47 13.38 15.9 16.87 15.36 20.17 11.08 14.74 16.64 12.36 19.46 15.02 18.02 21.23 22.38 19.13 16.45 15.38 15.32 16.53 33.04 28.45 26.55 22.6 25.4 24.89 21.08 19.04 27.62
Bra023915 (PBL29)
 0.0 0.04 0.0 0.0 0.0 0.0 0.0 1.18 0.0 0.0 0.01 0.0 1.1 0.1 0.02 0.88 2.05 0.87 0.0 0.0 0.02 0.63 3.14 2.13 1.6 1.26 2.37 1.28 1.68 1.59 2.52
Bra024001 (CYP71B2)
 0.72 0.12 0.0 0.18 5.17 6.65 5.05 0.59 3.23 1.3 4.34 2.57 4.2 4.96 1.41 8.14 2.63 1.52 5.28 3.96 3.72 4.21 2.45 11.6 12.39 11.13 13.13 7.77 15.39 12.11 14.69
Bra024939 (PME5)
 1.04 0.1 0.33 2.61 1.59 2.85 10.88 9.74 10.85 19.39 26.46 13.78 20.65 1.48 3.21 7.72 15.42 5.78 8.56 12.5 7.09 7.89 12.54 35.51 28.82 28.5 28.85 25.21 40.2 25.23 26.49
26.96 29.32 25.01 31.68 30.23 40.17 41.69 38.51 31.05 27.92 32.9 30.36 32.08 30.77 28.87 38.14 33.37 22.68 27.99 39.94 33.72 31.8 22.38 42.45 44.77 43.23 44.97 44.91 47.56 35.65 41.55
3.4 2.74 2.77 3.61 5.65 7.43 7.71 7.28 5.1 5.31 5.31 5.21 7.39 7.37 7.83 7.91 7.41 6.03 6.05 6.97 5.91 6.9 10.13 10.68 10.15 8.13 10.14 8.8 10.22 8.65 11.94
Bra028025 (OHP2)
 166.7 164.1 158.12 181.09 134.23 228.45 241.27 231.17 225.03 215.6 248.44 252.21 221.3 197.81 218.27 222.14 238.54 174.12 242.31 234.22 211.98 238.81 156.49 268.64 263.48 247.13 282.99 275.0 256.52 225.48 242.11
Bra028032 (CEK3)
 0.09 0.1 0.02 0.12 0.1 0.57 1.36 2.59 1.61 1.25 1.59 1.47 1.78 1.83 2.23 2.37 2.16 1.11 1.51 1.13 1.21 2.18 0.9 2.98 2.58 1.94 2.08 2.85 3.0 2.25 2.08
7.38 9.9 10.15 9.71 11.01 8.36 12.33 13.13 7.99 12.34 10.95 10.36 15.52 10.0 10.0 13.61 13.05 11.07 9.89 12.2 11.3 11.72 18.45 17.23 17.02 15.96 17.79 15.85 13.89 13.89 15.13
Bra030219 (IAA8)
 39.01 35.82 28.66 34.31 64.96 57.13 63.99 51.08 54.28 63.15 66.72 55.55 62.42 47.46 48.49 77.48 64.9 46.03 55.98 60.76 66.69 62.71 25.62 75.58 78.87 67.83 78.98 76.69 63.3 60.34 60.41
Bra030544 (GBPL1)
 2.87 2.29 2.6 2.0 3.94 2.7 1.96 2.84 2.14 2.19 2.12 1.42 3.49 2.05 2.8 2.53 2.11 2.72 1.92 2.1 2.33 1.89 5.37 4.17 4.44 4.18 3.93 4.43 4.82 4.67 5.71
Bra031244 (ORRM1)
 1.98 1.22 1.44 2.53 3.45 2.92 3.0 5.59 1.55 2.14 2.56 2.1 4.5 3.41 4.56 3.58 2.92 3.09 2.02 2.96 2.35 2.16 4.76 3.95 3.81 3.07 4.33 3.76 2.6 2.39 6.5
590.18 482.26 557.57 609.17 632.84 660.3 812.5 832.89 587.95 673.31 569.59 484.37 782.27 536.28 469.03 708.21 735.14 534.96 755.15 1083.48 1063.37 973.87 505.1 873.01 913.78 803.36 892.38 916.73 927.44 690.92 850.3
Bra031739 (TMN1)
 3.93 4.6 4.09 3.96 5.54 4.74 4.13 3.99 3.17 3.89 3.36 4.54 4.05 6.18 5.46 4.67 3.62 6.35 4.07 4.07 3.81 3.53 8.79 6.7 6.72 6.45 7.65 7.0 6.32 6.49 8.46
0.21 0.0 0.06 0.14 0.27 0.74 1.25 1.8 1.56 1.17 1.23 1.05 0.53 1.11 0.57 1.27 1.75 0.59 1.17 0.8 1.17 1.18 0.28 2.59 1.94 1.49 1.97 1.99 2.91 2.69 2.03
0.59 0.61 1.69 0.8 1.06 0.98 0.89 1.34 1.55 1.43 1.41 1.46 1.58 2.44 1.94 1.55 1.44 1.3 1.0 1.63 1.42 1.17 2.45 1.53 1.41 1.39 1.71 2.2 2.02 2.59 1.55
Bra032956 (PES2)
 2.31 1.2 1.21 0.59 2.69 1.69 3.4 2.79 3.05 4.53 2.12 3.27 2.31 1.98 1.01 3.59 3.73 0.78 2.01 2.86 2.72 3.4 1.83 5.7 5.92 5.82 5.19 6.48 4.9 3.56 3.81
Bra033902 (RAF36)
 1.03 0.0 0.09 0.32 0.84 0.94 0.59 0.49 0.8 0.97 1.2 1.09 0.34 0.7 1.28 2.28 0.87 0.41 1.34 1.09 0.78 0.39 1.49 3.89 5.31 3.98 4.1 2.12 2.68 2.28 5.6
60.47 31.77 21.84 112.04 123.15 170.67 206.91 110.02 177.88 136.79 154.07 170.59 116.4 39.2 71.29 111.96 80.28 78.55 196.12 229.37 138.99 157.35 70.45 337.55 316.12 222.81 320.96 275.17 298.68 171.31 175.08
0.66 1.44 1.34 0.92 1.06 0.87 0.74 0.85 1.05 0.74 1.26 1.29 2.55 1.66 1.34 1.16 1.15 1.47 0.71 1.08 0.51 1.27 2.1 2.77 3.09 2.4 2.5 2.99 2.84 2.6 4.0
Bra036844 (PLP3a)
 4.12 6.11 4.41 2.72 6.35 4.2 8.13 6.91 11.42 12.6 9.06 11.39 18.74 16.3 10.1 14.76 9.73 12.72 7.47 12.74 9.12 10.99 12.65 12.4 14.56 11.77 12.67 15.26 13.26 12.26 13.87
Bra038054 (NUC)
 0.0 2.13 1.24 1.28 1.71 3.55 8.03 9.84 12.63 5.25 9.29 14.11 8.89 13.03 15.83 9.59 9.22 7.97 2.56 12.86 7.46 11.07 19.99 12.07 12.11 10.77 11.92 12.54 14.0 19.38 13.11
1.12 0.52 0.34 0.83 1.65 1.26 1.57 1.46 1.1 1.54 1.48 0.92 1.43 0.8 0.76 1.89 2.37 0.83 1.24 1.82 1.89 1.62 0.22 2.22 1.71 1.59 1.88 1.98 1.71 1.2 1.86

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)