Heatmap: Cluster_241 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_0_1300.1 (SYT2)	-0.33	-0.19	-0.34	-0.28	1.2	0.65	-0.45	-0.13	-0.1	-0.09	0.17	0.06	-0.8	1.13	0.66	-0.21	-0.56	-1.27	0.54	-0.36	-0.37	-0.3	-2.4	-0.21	-0.38	-0.41	-0.25	-0.4	0.42	0.35	0.34
Lsat_1_v5_gn_0_33241.1	-1.19	-1.22	-1.55	-1.33	1.37	1.09	-1.07	-0.39	-0.14	-0.13	-0.08	-0.25	-2.6	1.48	1.17	0.41	-0.31	-4.68	0.36	0.01	-0.28	0.02	-4.86	-0.17	-0.36	-0.23	0.07	-0.33	0.51	0.53	0.09
Lsat_1_v5_gn_1_19640.1 (JGB)	-0.82	-0.79	-1.86	-2.05	0.28	0.77	-0.11	-0.21	-0.33	-0.55	-0.21	-0.58	-1.53	2.05	1.46	0.04	-0.27	-6.47	0.82	0.04	0.34	0.3	-3.59	-0.14	0.0	0.02	0.32	-0.62	-0.0	-0.41	-0.9
Lsat_1_v5_gn_1_45900.1	-0.8	-0.88	-1.18	-1.5	0.21	0.68	0.17	-0.77	-0.09	-0.15	-0.19	-0.36	-0.84	1.7	1.46	0.22	0.12	-3.92	0.51	0.09	-0.0	0.03	-2.82	-0.09	-0.22	-0.21	-0.13	-0.37	0.18	0.08	0.1
Lsat_1_v5_gn_2_115560.1	-1.38	-0.74	-1.06	-0.93	0.28	0.32	-0.05	-0.33	0.05	0.06	0.2	-0.17	-0.73	1.3	1.09	-0.02	-0.11	-0.69	0.48	0.11	0.11	0.17	-2.32	-0.19	-0.25	0.1	0.16	-0.12	0.08	0.09	0.15
Lsat_1_v5_gn_2_117441.1	-0.32	-0.32	-0.56	-0.57	0.3	0.49	-0.16	-0.26	-0.37	-0.39	-0.29	-0.62	-0.54	1.23	0.85	0.21	-0.1	0.31	0.39	-0.31	-0.09	0.07	-0.31	-0.25	-0.15	0.02	0.06	-0.23	0.16	-0.01	-0.25
Lsat_1_v5_gn_2_120441.1 (UBP3)	-1.69	-1.33	-0.66	-0.4	0.76	0.74	-0.18	-0.86	-0.24	-0.59	0.11	-0.14	-2.2	1.98	1.91	0.52	-0.51	-1.65	0.27	-0.65	-0.08	-0.27	-3.26	-0.75	-0.53	-0.77	-0.36	-0.45	0.28	-0.28	0.13
Lsat_1_v5_gn_2_123620.1	-0.96	-1.31	-1.12	-1.58	0.06	0.41	0.04	-0.36	0.05	-0.08	0.38	0.05	-0.83	1.42	1.06	0.17	0.02	-1.59	0.38	0.17	0.03	0.02	-2.25	-0.41	-0.18	-0.2	-0.18	-0.2	0.35	0.46	0.5
Lsat_1_v5_gn_2_135900.1	-0.22	-0.66	-0.15	-0.2	0.11	0.5	0.33	-0.32	-0.04	-0.33	-0.11	-0.55	-0.63	1.33	1.11	0.11	0.19	-2.16	0.07	-0.02	-0.14	-0.09	-1.92	-0.46	-0.52	0.11	0.03	0.07	0.04	0.11	0.27
Lsat_1_v5_gn_3_100480.1	-3.01	-1.81	-2.76	-2.15	0.75	1.03	-0.12	-1.33	0.01	0.15	-0.22	-0.65	-1.93	1.5	1.5	0.29	-0.31	-2.66	0.88	0.33	0.14	0.22	-7.18	-0.35	-0.31	0.24	0.33	-0.24	0.76	-0.03	-0.94
Lsat_1_v5_gn_3_63100.1 (TMO6)	-0.44	-0.79	-0.57	-0.58	-0.1	0.08	0.13	-0.12	0.32	0.05	0.2	-0.12	-0.32	1.0	0.93	0.3	0.33	-4.11	0.33	0.03	0.1	0.06	-2.44	-0.0	-0.04	-0.31	-0.18	-0.09	0.19	0.35	0.2
Lsat_1_v5_gn_3_87680.1 (ARA12)	-1.18	-0.96	-0.89	-0.58	0.42	0.66	-0.08	-0.15	-0.13	-0.12	-0.05	-0.22	-0.32	1.26	1.23	0.37	-0.02	-1.23	0.54	0.0	-0.07	0.01	-1.67	-0.1	-0.19	-0.22	-0.05	-0.24	0.11	-0.05	-0.14
Lsat_1_v5_gn_3_89100.1 (UBP1B)	-1.36	-2.02	-0.98	-3.19	0.77	0.79	-0.62	-0.31	0.04	-0.31	-0.09	-1.0	-1.15	2.08	1.69	0.58	-0.62	-2.09	0.37	0.04	-0.99	-0.86	-2.55	-0.37	-0.51	0.07	0.2	-0.83	-0.1	-0.06	0.69
Lsat_1_v5_gn_3_90240.1	-0.41	-0.55	-0.69	-0.91	0.64	0.59	-0.03	-0.09	0.06	-0.01	0.21	-0.1	-0.35	0.96	1.0	0.16	-0.27	-1.01	-0.03	-0.3	-0.31	-0.21	-0.15	-0.27	-0.27	-0.12	-0.06	-0.36	0.21	0.17	0.21
Lsat_1_v5_gn_4_148220.1	-0.63	-0.46	-0.69	-1.21	0.8	0.87	-0.12	0.16	-0.45	-0.28	0.01	-0.27	0.03	1.61	0.76	0.04	-0.5	-0.98	0.2	-0.5	-0.58	-0.27	-0.88	-0.2	-0.32	-0.4	-0.37	-0.32	0.31	0.2	0.35
Lsat_1_v5_gn_4_173760.1 (FER)	-2.07	-1.01	-1.69	-2.18	0.52	0.64	-0.32	-0.42	-0.37	-0.23	-0.15	-0.2	-1.42	1.39	1.32	0.66	-0.1	-1.29	0.42	-0.31	-0.24	0.05	-1.78	0.1	-0.51	-0.13	-0.22	-1.1	0.68	0.72	0.86
Lsat_1_v5_gn_4_182120.1 (HAT5)	-1.38	-0.82	-1.41	-1.4	0.82	0.76	-0.4	-0.34	-0.08	-0.13	-0.03	-0.18	-0.54	1.33	1.12	0.36	-0.03	-1.28	0.05	-0.21	-0.12	-0.16	-2.53	0.03	-0.14	-0.17	-0.01	-0.48	0.52	0.37	0.48
Lsat_1_v5_gn_4_88101.1 (SD2-5)	-0.88	-0.71	-1.02	-0.32	1.01	0.86	-0.31	-0.8	0.03	-0.08	0.06	-0.44	-0.98	1.03	0.9	0.09	-0.42	-0.29	0.27	-0.4	-0.05	0.02	-2.08	-0.44	-0.11	0.22	0.16	-0.66	0.3	0.18	0.53
Lsat_1_v5_gn_5_119861.1 (CID9)	-0.85	-0.78	-0.84	-0.57	0.23	0.41	0.03	-0.07	-0.16	0.04	0.1	-0.09	-0.31	1.0	0.75	0.2	0.05	-0.76	0.01	-0.01	-0.13	-0.16	-0.17	-0.21	-0.09	-0.14	-0.11	-0.16	0.4	0.21	0.3
Lsat_1_v5_gn_5_153021.1	-1.8	-1.26	-1.42	-0.7	0.7	0.8	-0.14	-0.39	-0.03	-0.19	0.08	-0.42	-0.95	1.39	1.1	0.2	-0.03	-0.01	0.3	0.0	-0.05	-0.06	-0.61	-0.37	-0.25	-0.05	-0.03	-0.05	0.22	0.03	-0.54
Lsat_1_v5_gn_5_159340.1 (RER1)	-0.46	-0.39	-0.32	-0.37	0.3	0.36	0.14	0.44	-0.03	0.0	0.25	-0.09	-0.16	0.75	0.51	0.0	-0.22	-0.72	-0.01	-0.16	-0.15	-0.07	-0.96	-0.12	-0.11	-0.07	0.04	-0.19	0.13	0.25	0.21
Lsat_1_v5_gn_5_171201.1 (SMXL7)	-0.93	-0.7	-0.77	-0.35	0.61	0.62	-0.05	-0.33	0.07	-0.08	0.07	-0.2	-0.6	0.95	0.94	0.22	-0.01	-1.27	0.15	-0.13	-0.08	-0.08	-1.22	-0.04	-0.15	0.11	0.08	-0.24	0.21	0.02	0.36
Lsat_1_v5_gn_5_184661.1	-0.7	-0.5	-0.73	-0.53	0.28	0.35	-0.1	-0.0	0.19	0.19	0.16	-0.04	-0.29	1.03	0.78	-0.09	-0.07	-0.73	0.22	-0.14	-0.23	-0.12	-0.19	-0.25	-0.15	-0.2	-0.12	-0.22	0.13	0.06	0.35
Lsat_1_v5_gn_5_190860.1 (MFP2)	-0.21	-0.21	-0.35	-0.35	0.24	0.32	-0.03	0.03	-0.15	-0.15	-0.09	-0.17	-0.03	0.77	0.63	0.21	0.07	-0.79	0.15	-0.11	-0.07	-0.04	-0.63	-0.21	-0.09	0.1	0.03	-0.12	0.15	0.07	0.07
Lsat_1_v5_gn_5_39260.1	-0.55	-0.27	-0.77	-0.46	0.73	0.61	0.09	0.25	0.18	0.28	0.09	-0.14	-0.62	1.08	0.73	-0.01	-0.26	-1.18	0.01	-0.3	-0.35	-0.06	-2.0	-0.27	-0.37	-0.09	-0.01	-0.38	0.37	0.31	0.09
Lsat_1_v5_gn_5_48780.1 (PYL2)	0.02	-0.75	-0.91	-1.28	0.16	0.28	-0.01	-0.61	0.23	-0.0	0.25	-0.09	-0.85	1.01	0.93	0.24	0.08	-1.8	0.57	0.2	0.19	0.12	-2.35	-0.29	-0.24	-0.28	-0.16	0.3	0.42	0.2	-0.04
Lsat_1_v5_gn_5_99040.1 (PID2)	-0.76	-1.01	-1.5	-1.58	0.55	0.86	-0.08	-0.24	-0.06	-0.41	-0.22	-0.34	-0.11	1.37	1.1	0.42	0.08	-2.07	0.32	-0.05	-0.06	0.05	-3.2	0.09	-0.13	-0.11	0.1	-0.28	0.22	0.2	0.06
Lsat_1_v5_gn_6_102001.1 (TGA3)	-1.84	-0.81	-2.1	-2.5	0.99	0.17	-0.05	0.26	0.03	0.04	0.36	-0.08	-0.72	1.98	1.49	0.03	-0.04	-2.09	0.64	-0.29	-1.03	-0.77	-5.27	-0.44	-0.99	-0.66	-0.7	-1.2	0.45	0.38	0.62
Lsat_1_v5_gn_6_47280.1 (HMA5)	-1.09	-1.33	-0.38	0.08	0.51	-0.01	-0.73	-1.26	-0.04	0.1	0.05	0.03	-0.15	1.54	1.66	0.47	0.18	-1.32	-0.02	0.06	-0.38	-0.56	-1.67	-0.03	-0.46	-0.38	-0.23	-0.6	-0.17	0.19	0.09
Lsat_1_v5_gn_6_51600.1 (RLP11)	-0.08	-0.49	-0.25	-0.49	0.38	0.58	0.18	0.04	-0.25	-0.15	-0.21	-0.26	-0.29	1.1	0.89	0.36	0.21	-1.27	0.06	-0.13	0.01	-0.21	-1.26	-0.08	-0.47	-0.15	-0.16	-0.45	0.05	0.07	0.26
Lsat_1_v5_gn_6_69800.1 (KUP3)	-0.34	-0.25	-0.48	-0.48	0.27	0.52	-0.01	0.19	-0.26	-0.29	-0.06	-0.17	-0.17	1.2	0.7	0.1	-0.18	-0.88	0.14	-0.2	-0.18	-0.06	-0.45	-0.18	-0.13	-0.05	-0.08	-0.18	0.14	0.02	0.13
Lsat_1_v5_gn_7_13361.1 (HT1)	-0.93	-1.04	-1.06	-0.65	0.19	0.46	-0.02	-0.63	-0.04	0.15	-0.04	0.05	-0.44	1.01	0.7	0.19	0.16	-0.64	0.43	0.02	0.03	0.04	-0.86	0.01	-0.07	-0.28	-0.16	0.17	0.34	0.32	0.11
Lsat_1_v5_gn_7_15820.1	-2.1	-1.3	-0.99	-0.52	0.92	1.04	-0.55	-0.93	0.08	-0.37	0.01	-0.36	-1.2	1.41	0.92	0.11	-0.34	-0.92	0.56	-0.07	-0.03	0.0	-2.99	0.17	0.11	0.18	0.17	-0.35	0.34	-0.19	0.12
Lsat_1_v5_gn_7_34001.1	-0.53	-0.58	-0.37	-0.18	0.8	0.58	-0.25	-0.19	-0.21	-0.08	0.02	-0.03	-0.45	1.37	0.85	0.01	-0.29	-0.67	0.15	-0.3	-0.28	-0.21	-0.79	-0.3	-0.29	-0.28	-0.1	-0.26	0.22	0.18	-0.06
Lsat_1_v5_gn_7_57420.1 (PBL17)	-0.68	-0.24	-0.78	-0.43	0.75	0.67	-0.14	-0.12	-0.08	0.06	-0.09	-0.0	0.08	1.09	0.62	-0.43	-0.35	-0.78	0.11	-0.42	-0.35	0.08	-0.91	-0.25	-0.15	-0.17	-0.06	-0.16	0.45	0.2	0.21
Lsat_1_v5_gn_7_7100.1 (BEN1)	-1.11	-0.86	-0.81	-0.4	0.75	0.61	-0.19	-0.48	-0.08	-0.26	0.04	-0.08	-0.64	1.47	1.01	0.17	0.04	-1.15	0.31	-0.08	-0.19	-0.22	-1.02	-0.07	-0.11	-0.3	-0.22	-0.48	-0.07	0.09	0.47
Lsat_1_v5_gn_7_99420.1 (CASPL2A1)	-1.09	-1.13	-0.91	-0.7	0.04	-0.02	0.02	0.08	0.08	0.06	0.13	-0.09	-0.26	0.97	0.83	0.21	0.16	-0.4	0.4	0.06	-0.1	-0.04	-0.97	-0.01	-0.22	-0.21	-0.14	-0.39	0.44	0.33	0.41
Lsat_1_v5_gn_8_142860.1 (TPS27)	-1.83	-0.97	-1.86	-1.74	0.5	0.57	-0.1	-0.83	0.33	0.19	0.16	-0.48	-1.88	1.06	1.16	0.54	0.06	-3.95	0.47	0.05	0.16	0.02	-2.81	0.12	-0.17	-0.09	0.23	-1.73	0.54	0.88	0.57
Lsat_1_v5_gn_8_26560.1 (NLP5)	-1.93	-1.19	-2.05	-1.91	0.58	0.89	0.36	0.05	0.01	-0.26	-0.07	-0.56	-0.9	1.6	1.27	0.22	-0.2	-0.72	0.59	0.05	0.03	-0.0	-1.85	-0.11	-0.28	-0.01	0.2	-0.27	0.03	-0.37	-0.59
Lsat_1_v5_gn_9_3521.1 (CDKG2)	-0.51	-0.46	-0.72	-0.61	0.44	0.61	-0.05	-0.24	-0.12	-0.27	0.11	-0.35	-0.82	1.33	0.86	0.0	-0.16	0.03	0.5	-0.17	-0.18	-0.07	-1.18	-0.21	-0.11	-0.01	0.42	-0.27	0.11	-0.22	-0.48
Lsat_1_v5_gn_9_9741.1 (MGT9)	-0.26	0.1	-0.24	-0.2	0.79	0.75	0.24	0.52	-0.05	-0.19	0.03	-0.24	-0.38	0.95	0.71	-0.07	-0.38	-0.89	-0.02	-0.43	-0.45	-0.38	-1.32	-0.51	-0.31	-0.41	-0.3	-0.49	0.31	0.21	0.29

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.