Coexpression cluster: Cluster_22 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0046873 metal ion transmembrane transporter activity 3.96% (8/202) 3.92 0.0 1.1e-05
GO:0030001 metal ion transport 3.96% (8/202) 3.95 0.0 2e-05
GO:0022890 inorganic cation transmembrane transporter activity 3.96% (8/202) 2.95 1.1e-05 0.001246
GO:0008324 monoatomic cation transmembrane transporter activity 3.96% (8/202) 2.86 1.7e-05 0.001442
GO:0015075 monoatomic ion transmembrane transporter activity 4.46% (9/202) 2.56 2.5e-05 0.00145
GO:0006812 monoatomic cation transport 3.96% (8/202) 2.71 3.4e-05 0.001495
GO:0015318 inorganic molecular entity transmembrane transporter activity 3.96% (8/202) 2.8 2.3e-05 0.00158
GO:0006811 monoatomic ion transport 4.46% (9/202) 2.52 3.2e-05 0.001595
GO:0015969 guanosine tetraphosphate metabolic process 0.99% (2/202) 6.34 0.00024 0.006949
GO:0034035 purine ribonucleoside bisphosphate metabolic process 0.99% (2/202) 6.34 0.00024 0.006949
GO:0022857 transmembrane transporter activity 7.43% (15/202) 1.57 0.000191 0.00737
GO:0005215 transporter activity 7.43% (15/202) 1.55 0.000221 0.007668
GO:0016725 oxidoreductase activity, acting on CH or CH2 groups 0.99% (2/202) 6.08 0.000359 0.00959
GO:0030410 nicotianamine synthase activity 0.99% (2/202) 5.85 0.000501 0.009665
GO:0030418 nicotianamine biosynthetic process 0.99% (2/202) 5.85 0.000501 0.009665
GO:0030417 nicotianamine metabolic process 0.99% (2/202) 5.85 0.000501 0.009665
GO:0072350 tricarboxylic acid metabolic process 0.99% (2/202) 5.85 0.000501 0.009665
GO:0072351 tricarboxylic acid biosynthetic process 0.99% (2/202) 5.85 0.000501 0.009665
GO:0055085 transmembrane transport 6.44% (13/202) 1.37 0.001732 0.031638
GO:0016020 membrane 9.9% (20/202) 0.98 0.002976 0.04131
GO:0019637 organophosphate metabolic process 2.48% (5/202) 2.38 0.002862 0.041373
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 1.49% (3/202) 3.41 0.002853 0.043047
GO:0033865 nucleoside bisphosphate metabolic process 0.99% (2/202) 4.66 0.002782 0.043883
GO:0033875 ribonucleoside bisphosphate metabolic process 0.99% (2/202) 4.66 0.002782 0.043883
GO:0034032 purine nucleoside bisphosphate metabolic process 0.99% (2/202) 4.66 0.002782 0.043883
GO:0032104 regulation of response to extracellular stimulus 0.5% (1/202) 7.66 0.004938 0.046313
GO:0019825 oxygen binding 0.5% (1/202) 7.66 0.004938 0.046313
GO:0006808 regulation of nitrogen utilization 0.5% (1/202) 7.66 0.004938 0.046313
GO:0032107 regulation of response to nutrient levels 0.5% (1/202) 7.66 0.004938 0.046313
GO:0006359 regulation of transcription by RNA polymerase III 0.5% (1/202) 7.66 0.004938 0.046313
GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity 0.5% (1/202) 7.66 0.004938 0.046313
GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor 0.5% (1/202) 7.66 0.004938 0.046313
GO:0016480 negative regulation of transcription by RNA polymerase III 0.5% (1/202) 7.66 0.004938 0.046313
GO:0016307 obsolete phosphatidylinositol phosphate kinase activity 0.99% (2/202) 4.2 0.005252 0.047963
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_6 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_8 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_12 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_33 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_40 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_73 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_80 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_82 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_87 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_96 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_111 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_115 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_128 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_140 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_143 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_144 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_145 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_159 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_193 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_199 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_214 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_219 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_231 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_234 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_243 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_247 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_253 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_271 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_278 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_401 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_174 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (202) (download table)

InterPro Domains

GO Terms

Family Terms