Spov3_chr3.02717 (TOP1BETA, TOP1)

Aliases : TOP1BETA, TOP1

Description : not classified

Gene families : OG0003825 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003825_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr3.02717
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_45

Target	Alias	Description	ECC score	Gene Family Method	Actions
Spov3_chr1.01864	TOP1BETA, TOP1	not classified	0.11	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0005992	trehalose biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006835	dicarboxylic acid transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009767	photosynthetic electron transport chain	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015740	C4-dicarboxylate transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015743	malate transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015849	organic acid transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016168	chlorophyll binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019684	photosynthesis, light reaction	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046906	tetrapyrrole binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR008336	TopoI_DNA-bd_euk	2	71

External Links

No external refs found!

Spov3_chr3.02717 (TOP1BETA, TOP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation