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  5. Spov3_chr3.01223

Spov3_chr3.01223 (CDF6)


Aliases : CDF6

Description : not classified


Gene families : OG0000161 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000161_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr3.01223

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0006.00023 3xHMG-box1 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0048.00014 BMY7, AtBAM1,... not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01169 APG8H, ATG8I not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05584 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05597 BMY7, AtBAM1,... not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00124 BMY7, AtBAM1,... not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00189 No alias not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01604 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.02182 BMY7, AtBAM1,... not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03901 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000278 mitotic cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0000775 chromosome, centromeric region IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007049 cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008146 sulfotransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008649 rRNA methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0031167 rRNA methylation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032259 methylation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032502 developmental process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043414 macromolecule methylation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048364 root development IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048367 shoot system development IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048731 system development IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048856 anatomical structure development IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0070475 rRNA base methylation IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0098687 chromosomal region IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0099402 plant organ development IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140102 catalytic activity, acting on a rRNA IEP Spinacia oleracea GO terms from Neighborhoods

No InterPro domains available for this sequence

No external refs found!