Spov3_chr3.00936 (ATRANGAP2, ATSCAR1,...)

Aliases : ATRANGAP2, ATSCAR1, WAVE1, SCAR1

Description : not classified

Gene families : OG0000156 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr3.00936
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_250

Target	Alias	Description	ECC score	Gene Family Method
Spov3_C0035.00025	No alias	not classified	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01464	No alias	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03211	SSP4	not classified	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03911	No alias	not classified	0.09	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01860	No alias	not classified	0.08	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.01488	MyoB1	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02487	EMB2769, CWC15	not classified	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02719	No alias	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006417	regulation of translation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006950	response to stress	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006979	response to oxidative stress	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008200	ion channel inhibitor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009611	response to wounding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016247	channel regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016248	channel inhibitor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016307	obsolete phosphatidylinositol phosphate kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0017148	negative regulation of translation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030597	RNA glycosylase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030598	rRNA N-glycosylase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034248	regulation of amide metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034249	negative regulation of amide metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051248	negative regulation of protein metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0098772	molecular function regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0099106	ion channel regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140678	molecular function inhibitor activity	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	141	217
IPR002156	RNaseH_domain	263	328

External Links

No external refs found!

Spov3_chr3.00936 (ATRANGAP2, ATSCAR1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation