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  5. Spov3_chr2.05534

Spov3_chr2.05534 (EMB80, EMB1275, ATDEK1, DEK1)


Aliases : EMB80, EMB1275, ATDEK1, DEK1

Description : not classified


Gene families : OG0000009 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000009_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr2.05534

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0039.00013 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0040.00001 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0040.00002 MTK, ATMTK, MTK1 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0040.00015 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0040.00016 ATSFH12, SFH12 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0040.00021 MTK, ATMTK, MTK1 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0047.00008 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0067.00004 MTK, ATMTK, MTK1 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0067.00006 EMB80, EMB1275,... not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0075.00001 EMB80, EMB1275,... not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0075.00004 PDF1A, ATDEF1 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0100.00001 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0115.00004 No alias not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0130.00002 MTK, ATMTK, MTK1 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0159.00001 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0159.00002 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0197.00001 EMB80, EMB1275,... not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0242.00003 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0467.00001 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0709.00001 AKR4C11 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05253 MTK, ATMTK, MTK1 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05468 GTL1, ATGTL1, AT-GTL1 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05472 MTK, ATMTK, MTK1 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05504 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05682 ATSFH12, SFH12 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05685 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05713 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00158 EMB80, EMB1275,... not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00163 TKI1 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00164 GTL1, ATGTL1, AT-GTL1 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00185 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00192 IDN1, DMS3 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00200 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00272 EDM2 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00274 EMB80, EMB1275,... not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00400 ATSFH12, SFH12 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00402 LWD2 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00403 GTL1, ATGTL1, AT-GTL1 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01248 CHR12, ATCHR12 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01251 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01256 FTM2, HB31, AtHB31, ZHD4 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01262 AtRLP13, RLP13 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01263 GTL1, ATGTL1, AT-GTL1 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00634 AtRLP13, RLP13 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00635 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00636 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01221 MTK, ATMTK, MTK1 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01237 MTK, ATMTK, MTK1 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01238 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01239 MTK, ATMTK, MTK1 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04024 SIKIC3 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04025 EMB80, EMB1275,... not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04472 ATSFH12, SFH12 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04473 MTK, ATMTK, MTK1 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02910 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR041577 RT_RNaseH_2 662 714
IPR005162 Retrotrans_gag_dom 155 250
IPR004242 Transposase_21 1 60
IPR041588 Integrase_H2C2 782 840
IPR001584 Integrase_cat-core 853 952
No external refs found!