Spov3_chr2.05016 (NRPC2)

Aliases : NRPC2

Description : not classified

Gene families : OG0003087 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003087_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.05016
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_70

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000213	tRNA-intron endonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016892	RNA endonuclease activity, producing 3'-phosphomonoesters	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0034061	DNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007642	RNA_pol_Rpb2_2	192	358
IPR007644	RNA_pol_bsu_protrusion	40	407
IPR007120	DNA-dir_RNAP_su2_dom	891	1296
IPR007641	RNA_pol_Rpb2_7	1298	1407
IPR007646	RNA_pol_Rpb2_4	775	833
IPR007646	RNA_pol_Rpb2_4	537	597
IPR007647	RNA_pol_Rpb2_5	843	879
IPR007647	RNA_pol_Rpb2_5	619	640
IPR007645	RNA_pol_Rpb2_3	436	500
IPR007645	RNA_pol_Rpb2_3	674	738

External Links

No external refs found!

Spov3_chr2.05016 (NRPC2)

Expression Profile

Co-expression Networks

Functional Annotation