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Description : not classified
Gene families : OG0000065 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000065_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Spinacia oleracea (Sol) PCC: Spov3_chr2.04952 | |
| Cluster | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_55 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Spov3_C0002.00046 | AT-HSFA4C, RHA1, HSFA4C | not classified | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_C0068.00014 | AGL79 | not classified | 0.08 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.01300 | AGL79 | not classified | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.01367 | AT-HSFA4C, RHA1, HSFA4C | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.01965 | ATAF1, ANAC2, ANAC002 | not classified | 0.09 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.02063 | LRX9 | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.02396 | No alias | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.04542 | ATAF1, ANAC2, ANAC002 | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.02898 | SLK1 | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr3.01198 | MLO4, ATMLO4 | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr3.01834 | PICALM5B | not classified | 0.08 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr3.02850 | No alias | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr3.02880 | No alias | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr4.00676 | No alias | not classified | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr4.01210 | AGL79 | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr5.02852 | ROPGEF14, ATROPGEF14 | not classified | 0.09 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004518 | nuclease activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004519 | endonuclease activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004521 | RNA endonuclease activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004540 | RNA nuclease activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016891 | RNA endonuclease activity, producing 5'-phosphomonoesters | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0019321 | pentose metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0019566 | arabinose metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0031047 | regulatory ncRNA-mediated gene silencing | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0046373 | L-arabinose metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0046556 | alpha-L-arabinofuranosidase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | Spinacia oleracea GO terms from Neighborhoods |
No InterPro domains available for this sequence
| No external refs found! |