Spov3_chr2.02477

Description : not classified

Gene families : OG0000007 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.02477
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
Spov3_C0023.00026	No alias	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0070.00009	No alias	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S14.00032	mTERF 3, EMB3114, SL1	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S14.00033	AK-HSDH II, AK-HSDH	not classified	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S14.00035	P4H13	not classified	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03123	No alias	not classified	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00182	ABI3, AtABI3, SIS10	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01794	No alias	not classified	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00390	DICE1	not classified	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01217	DICE1	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01880	JAL35, AtJAC1, JR1	not classified	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04032	ATCPSF160, CPSF160	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02639	No alias	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.03111	No alias	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004521	RNA endonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004540	RNA nuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR041373	RT_RNaseH	704	805
IPR000477	RT_dom	451	612
IPR001584	Integrase_cat-core	984	1078
IPR041588	Integrase_H2C2	907	964

External Links

No external refs found!

Spov3_chr2.02477

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation