Spov3_chr2.01526

Description : not classified

Gene families : OG0000162 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000162_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.01526
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
Spov3_S04.00075	No alias	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S04.00076	No alias	not classified	0.09	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01221	No alias	not classified	0.1	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02672	MNU1	not classified	0.09	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01525	MNU1	not classified	0.1	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03371	No alias	not classified	0.08	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.00620	UMAMIT29	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0019321	pentose metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019566	arabinose metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046373	L-arabinose metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002156	RNaseH_domain	1032	1145
IPR000477	RT_dom	501	763

External Links

No external refs found!