Spov3_chr2.01401

Description : component *(Y14) of RNA quality control Exon Junction complex

Gene families : OG0000863 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000863_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.01401
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_45

Target	Alias	Description	ECC score	Gene Family Method	Actions
Spov3_chr2.05137	ATRBX1, RBX1, HRT1, ROC1	core component *(RBX1) of CULLIN-based E3 ubiquitin...	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0009521	photosystem	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009767	photosynthetic electron transport chain	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016168	chlorophyll binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019684	photosynthesis, light reaction	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR024766	Znf_RING_H2	22	57

External Links

No external refs found!