Spov3_chr1.04924 (bHLH13, bHLH013, JAM2)

Aliases : bHLH13, bHLH013, JAM2

Description : not classified

Gene families : OG0000162 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000162_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr1.04924

Target	Alias	Description	ECC score	Gene Family Method
Spov3_S04.00075	No alias	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S04.00076	No alias	not classified	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S08.00057	MNU1	not classified	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01042	MNU1	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.00456	MNU1	not classified	0.1	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02672	MNU1	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01525	MNU1	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.00620	UMAMIT29	not classified	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0015267	channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0020037	heme binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022803	passive transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046906	tetrapyrrole binding	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002156	RNaseH_domain	293	410
IPR026960	RVT-Znf	156	225

External Links

No external refs found!