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  5. Spov3_chr1.03900

Spov3_chr1.03900


Description : not classified


Gene families : OG0000150 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000150_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr1.03900
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_313

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0038.00031 HDG5, HB-7 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S02.00031 CRS1, ATCRS1 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02285 TPS03, ATTPS03 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.02083 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01442 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02379 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03171 No alias not classified 0.14 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03172 HDG5, HB-7 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02544 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0010333 terpene synthase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0046983 protein dimerization activity IEP Spinacia oleracea GO terms from Neighborhoods

No InterPro domains available for this sequence

No external refs found!