1. Home
  2. Species
  3. Spinacia oleracea
  4. Sequence
  5. Spov3_chr1.02612

Spov3_chr1.02612 (AtSAP60, EMB2776,...)


Aliases : AtSAP60, EMB2776, PRP4, LIS, AtPRP4

Description : component *(PRPF4) of spliceosomal U4/U6 snRNP


Gene families : OG0000244 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000244_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr1.02612

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0017.00046 AtSAP60,... not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0064.00004 ATKUP1, KUP1,... not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02388 AtSAP60,... component *(PRPF4) of spliceosomal U4/U6 snRNP 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03376 AtSAP60,... component *(PRPF4) of spliceosomal U4/U6 snRNP 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03430 AtSAP60,... component *(PRPF4) of spliceosomal U4/U6 snRNP 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03472 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001680 WD40_rpt 59 81
IPR001680 WD40_rpt 85 122
IPR001680 WD40_rpt 172 206
IPR001680 WD40_rpt 133 164
No external refs found!