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  5. Spov3_chr1.01890

Spov3_chr1.01890 (ERDL6, AtERDL6)


Aliases : ERDL6, AtERDL6

Description : not classified


Gene families : OG0000113 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr1.01890

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0003.00038 PNH, AGO10, ZLL not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0017.00006 ERDL6, AtERDL6 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0024.00033 ERDL6, AtERDL6 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S06.00020 AIL6, PLT3 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02616 ERDL6, AtERDL6 not classified 0.13 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.04566 AOP1, AOP1.1, AOP not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05498 ERDL6, AtERDL6 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01274 PUB33 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.03003 ERDL6, AtERDL6 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000723 telomere maintenance IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003678 DNA helicase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006281 DNA repair IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006950 response to stress IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006974 DNA damage response IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006996 organelle organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007034 vacuolar transport IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032200 telomere organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033554 cellular response to stress IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050896 response to stimulus IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051276 chromosome organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051716 cellular response to stimulus IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1903311 regulation of mRNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR005828 MFS_sugar_transport-like 21 71
No external refs found!