Spov3_S10.00032

Description : EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond

Gene families : OG0072468 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_S10.00032
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_150

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006771	riboflavin metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009231	riboflavin biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0042726	flavin-containing compound metabolic process	None	Extended
BP	GO:0042727	flavin-containing compound biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003909	DNA ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006099	tricarboxylic acid cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006812	monoatomic cation transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006826	iron ion transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006974	DNA damage response	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0030001	metal ion transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033554	cellular response to stress	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034755	iron ion transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043565	sequence-specific DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051716	cellular response to stimulus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_rpt	278	326
IPR002885	Pentatricopeptide_rpt	379	426
IPR046848	E_motif	497	559
IPR000422	DHBP_synthase_RibB	705	877
IPR002885	Pentatricopeptide_rpt	251	277
IPR002885	Pentatricopeptide_rpt	120	146
IPR002885	Pentatricopeptide_rpt	41	62
IPR002885	Pentatricopeptide_rpt	179	208
IPR002885	Pentatricopeptide_rpt	454	479
IPR002885	Pentatricopeptide_rpt	149	176
IPR032867	DYW_dom	595	641
IPR032677	GTP_cyclohydro_II	890	1054

External Links

No external refs found!

Spov3_S10.00032

Expression Profile

Co-expression Networks

Functional Annotation