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  5. Spov3_S08.00023

Spov3_S08.00023 (F8H)


Aliases : F8H

Description : not classified


Gene families : OG0000098 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000098_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_S08.00023
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_521

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr3.02728 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02779 SVR9, AtIF3-2, AtINFC-2 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02947 CSLD2, ATCSLD2 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006082 organic acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006520 amino acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008194 UDP-glycosyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019752 carboxylic acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043436 oxoacid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR041373 RT_RNaseH 960 1057
IPR041588 Integrase_H2C2 1173 1228
IPR005162 Retrotrans_gag_dom 178 267
IPR000477 RT_dom 710 869
No external refs found!