Spov3_S07.00042

Description : not classified

Gene families : OG0000090 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_S07.00042
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
Spov3_C0005.00041	No alias	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0009.00054	Obg A-2, CPSAR1,...	not classified	0.11	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0009.00055	No alias	not classified	0.1	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0009.00059	TARANI, TTN6,...	not classified	0.12	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0034.00025	No alias	not classified	0.1	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03578	No alias	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00553	TARANI, TTN6,...	not classified	0.11	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.01593	ECH	component *(ECHIDNA) of trans-Golgi-network (TGN)...	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04526	HDG3	not classified	0.11	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02237	TARANI, TTN6,...	not classified	0.11	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005319	lipid transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006974	DNA damage response	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010564	regulation of cell cycle process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019321	pentose metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019566	arabinose metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030896	checkpoint clamp complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033554	cellular response to stress	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045786	negative regulation of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046373	L-arabinose metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051716	cellular response to stimulus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0061024	membrane organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0120009	intermembrane lipid transfer	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0120013	lipid transfer activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003653	Peptidase_C48_C	1053	1254
IPR029480	Transpos_assoc	3	78
IPR004242	Transposase_21	301	511

External Links

No external refs found!

Spov3_S07.00042

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation