Spov3_C0064.00007 (MS188, AtMYB103,...)

Aliases : MS188, AtMYB103, MYB103, MYB80, ATMYB80

Description : not classified

Gene families : OG0000002 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_C0064.00007

Target	Alias	Description	ECC score	Gene Family Method
Spov3_C0010.00090	No alias	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0060.00011	No alias	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S02.00057	No alias	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02309	C3HC4	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02742	BRD13	not classified	0.12	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01493	NOT1	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.01991	No alias	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02312	No alias	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003678	DNA helicase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006950	response to stress	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006974	DNA damage response	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032200	telomere organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033554	cellular response to stress	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0050896	response to stimulus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051716	cellular response to stimulus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002156	RNaseH_domain	507	561
IPR041588	Integrase_H2C2	681	738
IPR041577	RT_RNaseH_2	325	423

External Links

No external refs found!

Spov3_C0064.00007 (MS188, AtMYB103,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation