Description : FRS/FRF-type transcription factor
Gene families : OG0000046 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000046_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Spinacia oleracea (Sol) PCC: Spov3_C0044.00001 | |
Cluster | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_285 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Spov3_C0044.00002 | BTL12, CIP8 | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_C0044.00003 | No alias | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_C0454.00001 | No alias | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_C0525.00001 | BTL12, CIP8 | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_S09.00041 | No alias | FRS/FRF-type transcription factor | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr1.00677 | FHY3, CPD45 | FRS/FRF-type transcription factor | 0.08 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.03585 | ATFTB, WIG, ERA1 | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.03627 | No alias | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.03629 | No alias | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.03644 | ATFTB, WIG, ERA1 | not classified | 0.09 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.04355 | No alias | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr3.02868 | ATFTB, WIG, ERA1 | not classified | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr3.02973 | No alias | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.00509 | BTL12, CIP8 | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.00512 | ABS7, MYB101,... | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.00514 | BTL12, CIP8 | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.01813 | ATFTB, WIG, ERA1 | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.01896 | No alias | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.01988 | FHY3, CPD45 | FRS/FRF-type transcription factor | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.02359 | No alias | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.02454 | No alias | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr6.00905 | ATFTB, WIG, ERA1 | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr6.00906 | FHY3, CPD45 | FRS/FRF-type transcription factor | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr6.00907 | ABS7, MYB101,... | not classified | 0.08 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr6.01677 | ATFTB, WIG, ERA1 | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr6.03035 | No alias | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0006754 | ATP biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
MF | GO:0010333 | terpene synthase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
MF | GO:0015078 | proton transmembrane transporter activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | Spinacia oleracea GO terms from Neighborhoods |
MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Spinacia oleracea GO terms from Neighborhoods |
CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | Spinacia oleracea GO terms from Neighborhoods |
CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0046034 | ATP metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007527 | Znf_SWIM | 210 | 241 |
No external refs found! |