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  5. Lsat_1_v5_gn_9_80040.1

Lsat_1_v5_gn_9_80040.1


Description : not classified


Gene families : OG0035167 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_80040.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_135


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005747 mitochondrial respiratory chain complex I IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006298 mismatch repair IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0022834 ligand-gated channel activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030964 NADH dehydrogenase complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0045271 respiratory chain complex I IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0098798 mitochondrial protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0098800 inner mitochondrial membrane protein complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0098803 respiratory chain complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1902495 transmembrane transporter complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1990204 oxidoreductase complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1990351 transporter complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR032867 DYW_dom 633 725
IPR002885 Pentatricopeptide_rpt 493 517
IPR002885 Pentatricopeptide_rpt 316 364
IPR002885 Pentatricopeptide_rpt 185 232
IPR002885 Pentatricopeptide_rpt 417 465
IPR046848 E_motif 535 597
No external refs found!