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  5. Lsat_1_v5_gn_9_122640.1

Lsat_1_v5_gn_9_122640.1 (CRT2, AtCRT1b, CRT1b)


Aliases : CRT2, AtCRT1b, CRT1b

Description : ER luminal lectin chaperone *(CRT)


Gene families : OG0001212 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001212_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_122640.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Bra018575 CRT2, AtCRT1b, CRT1b ER luminal lectin chaperone *(CRT) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra027936 AtCRT1a, CRT1, CRT1a ER luminal lectin chaperone *(CRT) 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra038166 AtCRT1a, CRT1, CRT1a ER luminal lectin chaperone *(CRT) 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01113 AtCRT1a, CRT1, CRT1a ER luminal lectin chaperone *(CRT) 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0005783 endoplasmic reticulum IEA Interproscan
BP GO:0006457 protein folding IEA Interproscan
MF GO:0051082 unfolded protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016859 cis-trans isomerase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0018193 peptidyl-amino acid modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0018208 peptidyl-proline modification IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0044183 protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140662 ATP-dependent protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001580 Calret/calnex 29 264
IPR001580 Calret/calnex 266 339
No external refs found!