Lsat_1_v5_gn_9_115140.1 (RIBA1, GCH, ATGCH,...)

Aliases : RIBA1, GCH, ATGCH, RFD1, ATRIBA1

Description : bifunctional GTP cyclohydrolase II *(RibA) and DHBP synthase *(RibB). EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond

Gene families : OG0003445 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003445_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_115140.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_180

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006771	riboflavin metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009231	riboflavin biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0042726	flavin-containing compound metabolic process	None	Extended
BP	GO:0042727	flavin-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004556	alpha-amylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004857	enzyme inhibitor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005991	trehalose metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005992	trehalose biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016160	amylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030414	peptidase inhibitor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0061134	peptidase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0061135	endopeptidase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140678	molecular function inhibitor activity	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000422	DHBP_synthase_RibB	77	267
IPR032677	GTP_cyclohydro_II	278	443

External Links

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Lsat_1_v5_gn_9_115140.1 (RIBA1, GCH, ATGCH,...)

Expression Profile

Co-expression Networks

Functional Annotation