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  5. Lsat_1_v5_gn_8_47161.1

Lsat_1_v5_gn_8_47161.1


Description : not classified


Gene families : OG0000044 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000044_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_47161.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_250

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_8_48361.1 TAO1 effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_48501.1 No alias effector receptor *(NLR) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_48660.1 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_49000.1 AtPP2-A8, PP2-A8 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_50701.1 RLM1 effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004175 endopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005102 signaling receptor binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008083 growth factor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008168 methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008283 cell population proliferation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008649 rRNA methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030545 signaling receptor regulator activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030546 signaling receptor activator activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031167 rRNA methylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032259 methylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0044183 protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046983 protein dimerization activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0048018 receptor ligand activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070475 rRNA base methylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140102 catalytic activity, acting on a rRNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140662 ATP-dependent protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002182 NB-ARC 4 181
No external refs found!