Lsat_1_v5_gn_8_32740.1

Description : not classified

Gene families : OG0001253 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001253_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_32740.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_206

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0000151	ubiquitin ligase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005543	phospholipid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006468	protein phosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007165	signal transduction	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008152	metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008235	metalloexopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008238	exopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008289	lipid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016310	phosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016755	aminoacyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032182	ubiquitin-like protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0035091	phosphatidylinositol binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0035673	oligopeptide transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042887	amide transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043130	ubiquitin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044238	primary metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045048	protein insertion into ER membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051205	protein insertion into membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070006	metalloaminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071816	tail-anchored membrane protein insertion into ER membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1904680	peptide transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR041677	DNA2/NAM7_AAA_11	241	608
IPR014016	UvrD-like_ATP-bd	1261	1370
IPR045529	DUF6469	83	203
IPR041679	DNA2/NAM7-like_C	617	812

External Links

No external refs found!

Lsat_1_v5_gn_8_32740.1

Expression Profile

Co-expression Networks

Functional Annotation