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Aliases : HMGB3, NFD03, NFD3
Description : DNA bending architectural protein *(HMG-B)
Gene families : OG0000318 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000318_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_26980.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_237 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003674 | molecular_function | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003684 | damaged DNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003824 | catalytic activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004175 | endopeptidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004518 | nuclease activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004527 | exonuclease activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004673 | protein histidine kinase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005488 | binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005515 | protein binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005839 | proteasome core complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006399 | tRNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006508 | proteolysis | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006520 | amino acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0008152 | metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008233 | peptidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009056 | catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009314 | response to radiation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009416 | response to light stimulus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009581 | detection of external stimulus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009582 | detection of abiotic stimulus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009583 | detection of light stimulus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009584 | detection of visible light | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009605 | response to external stimulus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009628 | response to abiotic stimulus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0010498 | proteasomal protein catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0016459 | myosin complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016787 | hydrolase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016854 | racemase and epimerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016874 | ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0030163 | protein catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0031267 | small GTPase binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043038 | amino acid activation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0044238 | primary metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0051020 | GTPase binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051606 | detection of stimulus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0070001 | aspartic-type peptidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0071704 | organic substance metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140299 | small molecule sensor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901575 | organic substance catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:1902494 | catalytic complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR009071 | HMG_box_dom | 35 | 104 |
| No external refs found! |