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  5. Lsat_1_v5_gn_8_157940.1

Lsat_1_v5_gn_8_157940.1


Description : not classified


Gene families : OG0000056 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_157940.1

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_3_16961.1 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_3_16981.1 RLP37, EMB2800, AtRLP37 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_85600.1 FLS2 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_138040.1 CIK4 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_138300.1 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0019538 protein metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0044183 protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140096 catalytic activity, acting on a protein IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140662 ATP-dependent protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 38 74
IPR001611 Leu-rich_rpt 892 947
IPR001611 Leu-rich_rpt 307 362
IPR001611 Leu-rich_rpt 405 462
IPR001611 Leu-rich_rpt 472 531
IPR001611 Leu-rich_rpt 200 216
IPR001611 Leu-rich_rpt 229 250
IPR001611 Leu-rich_rpt 102 121
IPR001611 Leu-rich_rpt 684 705
IPR001611 Leu-rich_rpt 803 825
No external refs found!