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  5. Lsat_1_v5_gn_8_157441.1

Lsat_1_v5_gn_8_157441.1 (AtRLP52, RLP52)


Aliases : AtRLP52, RLP52

Description : not classified


Gene families : OG0000056 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_157441.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_0_43161.1 AtRLP26, RLP26 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_3_16961.1 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_3_16981.1 RLP37, EMB2800, AtRLP37 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_85660.1 EMS1, EXS not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_138040.1 CIK4 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_138400.1 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_140821.1 EMS1, EXS not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_157700.1 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070647 protein modification by small protein conjugation or removal IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 606 626
IPR001611 Leu-rich_rpt 504 563
IPR001611 Leu-rich_rpt 814 870
IPR001611 Leu-rich_rpt 382 441
IPR001611 Leu-rich_rpt 317 372
IPR001611 Leu-rich_rpt 109 123
IPR013210 LRR_N_plant-typ 32 69
No external refs found!