Lsat_1_v5_gn_8_149841.1 (EMB260, EMB2421)

Aliases : EMB260, EMB2421

Description : demethoxyubiquinone hydroxylase

Gene families : OG0009583 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_149841.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_207

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	None	Extended
MF	GO:0071949	FAD binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000178	exosome (RNase complex)	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0000786	nucleosome	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005575	cellular_component	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005685	U1 snRNP	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site recognition	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006783	heme biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006784	heme A biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006813	potassium ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016653	oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022618	protein-RNA complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0032993	protein-DNA complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042168	heme metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042440	pigment metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046148	pigment biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046160	heme a metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071805	potassium ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071826	protein-RNA complex organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901702	salt transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1905354	exoribonuclease complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR019080	YqaJ_viral_recombinase	461	609
IPR002938	FAD-bd	689	727
IPR002938	FAD-bd	64	405

External Links

No external refs found!

Lsat_1_v5_gn_8_149841.1 (EMB260, EMB2421)

Expression Profile

Co-expression Networks

Functional Annotation