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  5. Lsat_1_v5_gn_8_105740.1

Lsat_1_v5_gn_8_105740.1


Description : D-alanine:D-alanine ligase *(DDL)


Gene families : OG0000960 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000960_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_105740.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_207

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_6_24060.1 VHA-A1 subunit a of V-type ATPase membrane V0 subcomplex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0008716 D-alanine-D-alanine ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000160 phosphorelay signal transduction system IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003909 DNA ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003910 DNA ligase (ATP) activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004673 protein histidine kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005488 binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006310 DNA recombination IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006801 superoxide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072593 reactive oxygen species metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140299 small molecule sensor activity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011095 Dala_Dala_lig_C 803 914
IPR011095 Dala_Dala_lig_C 248 454
IPR011127 Dala_Dala_lig_N 485 652
IPR011127 Dala_Dala_lig_N 80 195
No external refs found!