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  5. Lsat_1_v5_gn_7_56141.1

Lsat_1_v5_gn_7_56141.1 (VPS60.1)


Aliases : VPS60.1

Description : not classified


Gene families : OG0000230 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000230_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_56141.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_9_33681.1 TCP10 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016763 pentosyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001810 F-box_dom 3 39
IPR013187 F-box-assoc_dom_typ3 184 291
No external refs found!